RLG00000027626

Glycosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
13275679 .. 13279344
3666 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027626

Sequence Viewer

Length: 1167 bp
ATGGGTCAGGACAATTTCACCCCTCAGAAGCGAAGCTCAAGTGGGCTGCCCACCACCACCTCCACCTCAGCCCGAGCAGCCTCCGCCGGCCGCGTCCTGCCACGTGGCCGCCAGATCCAGAAGACGTTCAACAACATCAAAATCACTATCCTCTGCGGCTTCGTCACCATCCTGGTCCTACGTGGCACGATCGGAGTGGGCAACCTCAATAGCTCTGAGGCCGATGCCGTGAACCAGAACTTAATCGAGGAGACGAATCGGATCCTGGCAGAGATCCGATCCGACAGTGACCCCAACTACCCGGATGAGTTCATAAACGGCACCCAGATCAGTAACCCGAACGTGCCGTACAAGCTCGGACCCAAGATCAGAAATTGGGACATAGATAGAAGGCGGTGGCTTCAGTCGAACCCGGAGTTTCCGAGCTTGGTGAACGGGTCGATAAGAGAGGAGGCCGGGAAGGTTTTGATGGCGAATTTGAAGGGGAGGCCGGCGTTTGAGGCGGATGATCAGTCTGCATTGATATACTTGTTGCTGTCGCAGAAGGATCTGTGGATGGAGAAGGTGATAGAGAAGTATCATCCGCGTTTGGGGGATGAGAGGTGGCCGTTTGTGACCCATTTTGTGGGTTGCAAGCCTTGTGGGAGTTATGAGGATTATCCGGTGGAGAGGTGCTTGAGCAGCATGGAGAGGGCTTTCAATTTTGCAGATAACCAGGTGCTTAAGCTTTACGAGTTGGTGGCTGGAGGTGGTGGAGCTGAATCAGGCTTCCATTCAGAGGTTGCATCTCCAAAAAAGGCTATCGCTACTGCTCCTGATAATCACAGAAAGTCTTTCAATGAAATGTATTCTAAACCACATAACTCATGGACACCTGTTGAGCAGCTTTCAGAGTCTTGTGTGCTTGATTTTTTCGGCAATGATGGATTGGAGGATGACCATGTAGAAGGAAGTCCAGTCCATGAAGCTCACATTGCATTTTCAGTTGAAGGTTTGGGAAAAGTGGGAATGGAAACACCGGTCCATTCACCAAAACAACCTGGAAGGACCTTCTCCTATGATTGCTCCACACCATTGCACGGTGCAAGGAAAGTAAACTCATTCAAGAACCTGAAGCATCTGGATGACATTGAAATTGAAGTGGTTAGAGTTATGATTAATTCTTAG

Protein Analysis

389

Amino Acids

43.16

Weight (kDa)

6.03

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 158 - 217 3.9e-09 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AccB7I CCANNNNNTGG 1 cut(s) 625
AccII CGCG 2 cut(s) 93, 586
AciI CCGC 7 cut(s) 84, 91, 109, 156, 394, 503, 584
AclWI GGATC 6 cut(s) 109, 256, 268, 269, 273, 555
AcoI YGGCCR 3 cut(s) 88, 106, 605
AcsI RAATTY 1 cut(s) 475
AcuI CTGAAG 2 cut(s) 386, 1133
AcvI CACGTG 1 cut(s) 104
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 4 cut(s) 590, 625, 778, 1079
AflII CTTAAG 1 cut(s) 722
AgeI ACCGGT 1 cut(s) 1018
AgsI TTSAA 8 cut(s) 130, 481, 700, 838, 989, 1105, 1133, 1139
AjnI CCWGG 4 cut(s) 171, 264, 714, 1039
AluBI AGCT 8 cut(s) 36, 213, 355, 426, 727, 758, 886, 968
AluI AGCT 8 cut(s) 36, 213, 355, 426, 727, 758, 886, 968
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 6 cut(s) 109, 256, 268, 269, 273, 555
Ama87I CYCGRG 1 cut(s) 72
AoxI GGCC 6 cut(s) 88, 106, 219, 453, 488, 605
ApeKI GCWGC 4 cut(s) 46, 77, 681, 883
ApoI RAATTY 1 cut(s) 475
AseI ATTAAT 1 cut(s) 1158
AsiGI ACCGGT 1 cut(s) 1018
Asp700I GAANNNNTTC 1 cut(s) 125
AspS9I GGNCC 4 cut(s) 175, 359, 1021, 1047
AsuC2I CCSGG 3 cut(s) 302, 413, 457
AsuHPI GGTGA 5 cut(s) 10, 157, 442, 577, 1020
AvaI CYCGRG 1 cut(s) 72
AvaII GGWCC 4 cut(s) 175, 359, 1021, 1047
BamHI GGATCC 1 cut(s) 261
BanI GGYRCC 1 cut(s) 320
BbrPI CACGTG 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 128
BbvCI CCTCAGC 1 cut(s) 67
BbvI GCAGC 4 cut(s) 33, 89, 693, 895
BccI CCATC 4 cut(s) 176, 463, 550, 917
BceAI ACGGC 4 cut(s) 212, 331, 334, 592
BciT130I CCWGG 4 cut(s) 173, 266, 716, 1041
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 3 cut(s) 302, 413, 457
BcoDI GTCTC 1 cut(s) 245
BfrI CTTAAG 1 cut(s) 722
BisI GCNGC 7 cut(s) 47, 78, 91, 109, 157, 682, 884
BlsI GCNGC 7 cut(s) 48, 79, 92, 110, 158, 683, 885
Bme1390I CCNGG 7 cut(s) 173, 266, 302, 413, 457, 716, 1041
Bme18I GGWCC 4 cut(s) 175, 359, 1021, 1047
BmeT110I CYCGRG 1 cut(s) 72
BmgT120I GGNCC 4 cut(s) 175, 359, 1021, 1047
BmiI GGNNCC 3 cut(s) 263, 322, 361
BmrFI CCNGG 7 cut(s) 173, 266, 302, 413, 457, 716, 1041
BmsI GCATC 3 cut(s) 214, 794, 1126
BpiI GAAGAC 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 765
Bpu10I CCTNAGC 1 cut(s) 67
BpuEI CTTGAG 2 cut(s) 22, 697
BpuMI CCSGG 3 cut(s) 302, 413, 457
BsaAI YACGTR 2 cut(s) 104, 182
BsaWI WCCGGW 2 cut(s) 661, 1018
Bsc4I CCNNNNNNNGG 4 cut(s) 590, 625, 778, 1079
Bse118I RCCGGY 3 cut(s) 86, 490, 1018
Bse1I ACTGG 1 cut(s) 956
Bse3DI GCAATG 3 cut(s) 925, 972, 1073
BseBI CCWGG 4 cut(s) 173, 266, 716, 1041
BseGI GGATG 8 cut(s) 168, 310, 511, 561, 580, 601, 940, 1129
BseLI CCNNNNNNNGG 4 cut(s) 590, 625, 778, 1079
BseMI GCAATG 3 cut(s) 925, 972, 1073
BseMII CTCAG 3 cut(s) 38, 81, 207
BseNI ACTGG 1 cut(s) 956
BseRI GAGGAG 2 cut(s) 263, 464
BseX3I CGGCCG 1 cut(s) 88
BseXI GCAGC 4 cut(s) 33, 89, 693, 895
Bsh1236I CGCG 2 cut(s) 93, 586
Bsh1285I CGRYCG 2 cut(s) 91, 192
BshFI GGCC 6 cut(s) 90, 108, 221, 455, 490, 607
BshNI GGYRCC 1 cut(s) 320
BshTI ACCGGT 1 cut(s) 1018
BsiEI CGRYCG 2 cut(s) 91, 192
BsiHKCI CYCGRG 1 cut(s) 72
BsiSI CCGG 7 cut(s) 87, 302, 413, 456, 491, 662, 1019
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 4 cut(s) 590, 625, 778, 1079
BsmAI GTCTC 1 cut(s) 245
BsmBI CGTCTC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 6 cut(s) 90, 108, 221, 455, 490, 607
BsoBI CYCGRG 1 cut(s) 72
Bsp143I GATC 9 cut(s) 114, 189, 261, 273, 278, 327, 366, 508, 547
BspACI CCGC 7 cut(s) 84, 91, 109, 156, 394, 503, 584
BspANI GGCC 6 cut(s) 90, 108, 221, 455, 490, 607
BspCNI CTCAG 3 cut(s) 37, 80, 208
BspFNI CGCG 2 cut(s) 93, 586
BspLI GGNNCC 3 cut(s) 263, 322, 361
BspPI GGATC 6 cut(s) 109, 256, 268, 269, 273, 555
BspT107I GGYRCC 1 cut(s) 320
BspTI CTTAAG 1 cut(s) 722
BsrDI GCAATG 3 cut(s) 925, 972, 1073
BsrFI RCCGGY 3 cut(s) 86, 490, 1018
BsrI ACTGG 1 cut(s) 956
BssAI RCCGGY 3 cut(s) 86, 490, 1018
BssMI GATC 9 cut(s) 114, 189, 261, 273, 278, 327, 366, 508, 547
Bst2UI CCWGG 4 cut(s) 173, 266, 716, 1041
Bst4CI ACNGT 2 cut(s) 287, 1082
BstAFI CTTAAG 1 cut(s) 722
BstBAI YACGTR 2 cut(s) 104, 182
BstC8I GCNNGC 3 cut(s) 88, 492, 635
BstDEI CTNAG 4 cut(s) 24, 67, 216, 1164
BstF5I GGATG 8 cut(s) 168, 310, 511, 561, 580, 601, 940, 1129
BstFNI CGCG 2 cut(s) 93, 586
BstKTI GATC 9 cut(s) 117, 192, 264, 276, 281, 330, 369, 511, 550
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 9 cut(s) 114, 189, 261, 273, 278, 327, 366, 508, 547
BstMCI CGRYCG 2 cut(s) 91, 192
BstMWI GCNNNNNNNGC 6 cut(s) 77, 83, 352, 500, 681, 974
BstNI CCWGG 4 cut(s) 173, 266, 716, 1041
BstSCI CCNGG 7 cut(s) 171, 264, 300, 411, 455, 714, 1039
BstUI CGCG 2 cut(s) 93, 586
BstV1I GCAGC 4 cut(s) 33, 89, 693, 895
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 4 cut(s) 114, 261, 273, 547
BstYI RGATCY 4 cut(s) 114, 261, 273, 547
BstZI CGGCCG 1 cut(s) 88
BsuRI GGCC 6 cut(s) 90, 108, 221, 455, 490, 607
BtsCI GGATG 8 cut(s) 168, 310, 511, 561, 580, 601, 940, 1129
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 3 cut(s) 88, 492, 635
Cfr10I RCCGGY 3 cut(s) 86, 490, 1018
Cfr13I GGNCC 4 cut(s) 175, 359, 1021, 1047
CseI GACGC 1 cut(s) 82
CsiI ACCWGGT 1 cut(s) 714
Csp6I GTAC 1 cut(s) 349
CspAI ACCGGT 1 cut(s) 1018
CspCI CAANNNNNGTGG 2 cut(s) 622, 657
CviAII CATG 4 cut(s) 685, 867, 941, 962
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 4 cut(s) 24, 67, 216, 1164
DpnI GATC 9 cut(s) 116, 191, 263, 275, 280, 329, 368, 510, 549
DpnII GATC 9 cut(s) 114, 189, 261, 273, 278, 327, 366, 508, 547
EaeI YGGCCR 3 cut(s) 88, 106, 605
EagI CGGCCG 1 cut(s) 88
EciI GGCGGA 2 cut(s) 73, 518
EclXI CGGCCG 1 cut(s) 88
Eco47I GGWCC 4 cut(s) 175, 359, 1021, 1047
Eco52I CGGCCG 1 cut(s) 88
Eco57I CTGAAG 2 cut(s) 386, 1133
Eco72I CACGTG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 1047
EcoRII CCWGG 4 cut(s) 171, 264, 714, 1039
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 4 cut(s) 688, 870, 944, 965
FaqI GGGAC 1 cut(s) 392
FatI CATG 4 cut(s) 684, 866, 940, 961
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 7 cut(s) 47, 78, 91, 109, 157, 682, 884
FokI GGATG 8 cut(s) 155, 317, 518, 567, 568, 608, 947, 1136
Fsp4HI GCNGC 7 cut(s) 47, 78, 91, 109, 157, 682, 884
GluI GCNGC 7 cut(s) 47, 78, 91, 109, 157, 682, 884
GsuI CTGGAG 1 cut(s) 765
HaeIII GGCC 6 cut(s) 90, 108, 221, 455, 490, 607
HapII CCGG 7 cut(s) 87, 302, 413, 456, 491, 662, 1019
HgaI GACGC 1 cut(s) 82
Hin1II CATG 4 cut(s) 688, 870, 944, 965
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 3 cut(s) 256, 761, 893
HpaII CCGG 7 cut(s) 87, 302, 413, 456, 491, 662, 1019
HphI GGTGA 5 cut(s) 10, 157, 442, 577, 1020
Hpy166II GTNNAC 3 cut(s) 232, 433, 1096
Hpy188III TCNNGA 5 cut(s) 8, 118, 815, 1105, 1121
Hpy8I GTNNAC 3 cut(s) 232, 433, 1096
HpyAV CCTTC 9 cut(s) 384, 454, 475, 538, 556, 941, 983, 1038, 1060
HpyCH4III ACNGT 2 cut(s) 287, 1082
HpyCH4IV ACGT 4 cut(s) 103, 125, 181, 342
HpyCH4V TGCA 7 cut(s) 518, 633, 707, 785, 977, 1078, 1085
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 83, 352, 500, 681, 974
HpyF3I CTNAG 4 cut(s) 24, 67, 216, 1164
HpySE526I ACGT 4 cut(s) 103, 125, 181, 342
Hsp92II CATG 4 cut(s) 688, 870, 944, 965
KroI GCCGGC 2 cut(s) 86, 490
KroNI GCCGGC 2 cut(s) 88, 492
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 9 cut(s) 114, 189, 261, 273, 278, 327, 366, 508, 547
LmnI GCTCC 3 cut(s) 755, 817, 1070
Lsp1109I GCAGC 4 cut(s) 33, 89, 693, 895
LweI GCATC 3 cut(s) 214, 794, 1126
MabI ACCWGGT 1 cut(s) 714
MaeII ACGT 4 cut(s) 103, 125, 181, 342
MaeIII GTNAC 4 cut(s) 163, 287, 332, 613
MalI GATC 9 cut(s) 116, 191, 263, 275, 280, 329, 368, 510, 549
MboI GATC 9 cut(s) 114, 189, 261, 273, 278, 327, 366, 508, 547
MboII GAAGA 1 cut(s) 133
MflI RGATCY 4 cut(s) 114, 261, 273, 547
MluCI AATT 6 cut(s) 13, 373, 475, 700, 1134, 1159
MlyI GAGTC 1 cut(s) 902
MmeI TCCRAC 1 cut(s) 306
MroNI GCCGGC 2 cut(s) 86, 490
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 3 cut(s) 242, 723, 1158
MslI CAYNNNNRTG 1 cut(s) 1122
MspCI CTTAAG 1 cut(s) 722
MspI CCGG 7 cut(s) 87, 302, 413, 456, 491, 662, 1019
MspR9I CCNGG 7 cut(s) 173, 266, 302, 413, 457, 716, 1041
MvaI CCWGG 4 cut(s) 173, 266, 716, 1041
MvnI CGCG 2 cut(s) 93, 586
MwoI GCNNNNNNNGC 6 cut(s) 77, 83, 352, 500, 681, 974
NaeI GCCGGC 2 cut(s) 88, 492
NciI CCSGG 3 cut(s) 302, 413, 457
NdeII GATC 9 cut(s) 114, 189, 261, 273, 278, 327, 366, 508, 547
NgoMIV GCCGGC 2 cut(s) 86, 490
NlaIII CATG 4 cut(s) 688, 870, 944, 965
NlaIV GGNNCC 3 cut(s) 263, 322, 361
NmuCI GTSAC 3 cut(s) 163, 287, 613
PdiI GCCGGC 2 cut(s) 88, 492
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 2 cut(s) 256, 761
PflMI CCANNNNNTGG 1 cut(s) 625
PinAI ACCGGT 1 cut(s) 1018
PkrI GCNGC 7 cut(s) 48, 79, 92, 110, 158, 683, 885
Ple19I CGATCG 1 cut(s) 192
PleI GAGTC 1 cut(s) 901
PmaCI CACGTG 1 cut(s) 104
PmlI CACGTG 1 cut(s) 104
PpsI GAGTC 1 cut(s) 901
Ppu21I YACGTR 2 cut(s) 104, 182
PpuMI RGGWCCY 1 cut(s) 1047
PshBI ATTAAT 1 cut(s) 1158
Psp5II RGGWCCY 1 cut(s) 1047
Psp6I CCWGG 4 cut(s) 171, 264, 714, 1039
PspCI CACGTG 1 cut(s) 104
PspGI CCWGG 4 cut(s) 171, 264, 714, 1039
PspN4I GGNNCC 3 cut(s) 263, 322, 361
PspPI GGNCC 4 cut(s) 175, 359, 1021, 1047
PspPPI RGGWCCY 1 cut(s) 1047
PsrI GAACNNNNNNTAC 2 cut(s) 332, 364
PsuI RGATCY 4 cut(s) 114, 261, 273, 547
PvuI CGATCG 1 cut(s) 192
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 1122
SaqAI TTAA 3 cut(s) 242, 723, 1158
SatI GCNGC 7 cut(s) 47, 78, 91, 109, 157, 682, 884
Sau3AI GATC 9 cut(s) 114, 189, 261, 273, 278, 327, 366, 508, 547
Sau96I GGNCC 4 cut(s) 175, 359, 1021, 1047
SchI GAGTC 1 cut(s) 902
ScrFI CCNGG 7 cut(s) 173, 266, 302, 413, 457, 716, 1041
SexAI ACCWGGT 1 cut(s) 714
SfaNI GCATC 3 cut(s) 214, 794, 1126
SinI GGWCC 4 cut(s) 175, 359, 1021, 1047
SmiMI CAYNNNNRTG 1 cut(s) 1122
SmlI CTYRAG 3 cut(s) 37, 676, 722
SmoI CTYRAG 3 cut(s) 37, 676, 722
Sse9I AATT 6 cut(s) 13, 373, 475, 700, 1134, 1159
SsiI CCGC 7 cut(s) 84, 91, 109, 156, 394, 503, 584
StyD4I CCNGG 7 cut(s) 171, 264, 300, 411, 455, 714, 1039
TaaI ACNGT 2 cut(s) 287, 1082
TaiI ACGT 4 cut(s) 106, 128, 184, 345
TaqI TCGA 3 cut(s) 246, 407, 440
TasI AATT 6 cut(s) 13, 373, 475, 700, 1134, 1159
TauI GCSGC 3 cut(s) 93, 111, 159
TfiI GAWTC 2 cut(s) 256, 761
Tru1I TTAA 3 cut(s) 242, 723, 1158
Tru9I TTAA 3 cut(s) 242, 723, 1158
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 3 cut(s) 163, 287, 613
TseI GCWGC 4 cut(s) 46, 77, 681, 883
Tsp45I GTSAC 3 cut(s) 163, 287, 613
TspDTI ATGAA 3 cut(s) 301, 855, 978
TspRI CASTG 1 cut(s) 292
Van91I CCANNNNNTGG 1 cut(s) 625
Vha464I CTTAAG 1 cut(s) 722
VpaK11BI GGWCC 4 cut(s) 175, 359, 1021, 1047
VspI ATTAAT 1 cut(s) 1158
XapI RAATTY 1 cut(s) 475
XcmI CCANNNNNNNNNTGG 1 cut(s) 864
XmnI GAANNNNTTC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.