Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005095

Physical Location & Seq

Genomic Coordinates Forward (+)

35348472 .. 35350159

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018754

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTGAAACCAATGCTACTCCAAGAAAGGGGTCAGGACAGGATCCGATCCGAGGCCAACGCCTTGAACCAGAACTTAATCGAGGAGACGAATCAGATCCTGGCCGAGATCCGATCCGATAGTGACCCCAACGACCCGGATGAGTTCATCAACGGCACCCAAATTAGTGACCCGAACGTGACGTACACGCTCGGACCCAAGATCGAAAATTGGGACATGGAGAGAAGGCGTGGTCTTTGGATTTGCTTGATGCTTGGGCTCCAATGGGTCCCAAGGGGGCCGATAAGAGAGGAGGCCGGGAAGAAGGATCTGTGGATGGAGAAGGTTTTTGTGGAGAATTCGTATTACTTGCACGGATATTGGGCTGGATTGGTGGATCAGTATGAGGAGATGATAGAGAAGTATCATTCAGGTTTGGGGGATGAGAGGTGGCCGTTTGTGACCCATTTTTGTGGGTTGCAAGCCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0033843 GO:0034637 GO:0034645 GO:0035252 GO:0040007 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

157

Amino Acids

18.26

Weight (kDa)

4.74

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74380 AT5G07720
fragaria_vesca	FvH4_5g14540 FvH4_5g14540
malus_domestica	MD06G1197600.v1.1 MD14G1205000.v1.1
prunus_persica	Prupe.5G198300_v2.0.a1
pyrus_communis	pycom14g16940
rosa_chinensis	RchiOBHm_Chr1g0355441 RchiOBHm_Chr6g0275691 RchiOBHm_Chr7g0182111 RchiOBHm_Chr7g0199921
rosa_laevigata	RLG00000005150 RLG00000007126 RLG00000018754 RLG00000027626 RLG00000033700
rosa_multiflora	Rmu_co8179518.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271500
rosa_rugosa	Rorug06G0445700
rosa_samantha	Rh1BG320500 Rh1CG334500 Rh1DG351200 Rh6CG214000 Rh6DG203300 Rh7AG048400 Rh7BG048200 Rh7DG047600
rosa_wichuraiana	Rw0G021050 Rw7G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AclWI	GGATC	8 cut(s)	37, 42, 50, 91, 103, 108, 315, 384
AcoI	YGGCCR	2 cut(s)	102, 431
AcsI	RAATTY	1 cut(s)	337
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	2 cut(s)	28, 52
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	8 cut(s)	37, 42, 50, 91, 103, 108, 315, 384
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	5 cut(s)	54, 102, 278, 294, 431
ApoI	RAATTY	1 cut(s)	337
AspS9I	GGNCC	3 cut(s)	194, 268, 278
AsuC2I	CCSGG	2 cut(s)	137, 298
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	194, 268
BamHI	GGATCC	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	261
BccI	CCATC	1 cut(s)	310
BceAI	ACGGC	2 cut(s)	169, 418
BciT130I	CCWGG	1 cut(s)	101
BcnI	CCSGG	2 cut(s)	137, 298
BcoDI	GTCTC	1 cut(s)	80
Bme1390I	CCNGG	3 cut(s)	101, 137, 298
Bme18I	GGWCC	2 cut(s)	194, 268
BmgT120I	GGNCC	3 cut(s)	194, 268, 278
BmiI	GGNNCC	7 cut(s)	44, 157, 196, 260, 269, 270, 279
BmrFI	CCNGG	3 cut(s)	101, 137, 298
BmsI	GCATC	1 cut(s)	240
BpuMI	CCSGG	2 cut(s)	137, 298
BsaJI	CCNNGG	2 cut(s)	51, 272
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 52
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	51, 272
BseGI	GGATG	3 cut(s)	145, 321, 427
BseLI	CCNNNNNNNGG	2 cut(s)	28, 52
BseRI	GAGGAG	3 cut(s)	98, 305, 401
BshFI	GGCC	5 cut(s)	56, 104, 280, 296, 433
BshNI	GGYRCC	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	137, 297
BslFI	GGGAC	2 cut(s)	227, 254
BslI	CCNNNNNNNGG	2 cut(s)	28, 52
BsmAI	GTCTC	1 cut(s)	80
BsmBI	CGTCTC	1 cut(s)	80
BsmFI	GGGAC	2 cut(s)	227, 254
BsnI	GGCC	5 cut(s)	56, 104, 280, 296, 433
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	8 cut(s)	42, 47, 96, 108, 113, 201, 307, 376
BspANI	GGCC	5 cut(s)	56, 104, 280, 296, 433
BspLI	GGNNCC	7 cut(s)	44, 157, 196, 260, 269, 270, 279
BspPI	GGATC	8 cut(s)	37, 42, 50, 91, 103, 108, 315, 384
BspT107I	GGYRCC	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	51, 272
BssMI	GATC	8 cut(s)	42, 47, 96, 108, 113, 201, 307, 376
BssT1I	CCWWGG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	462
BstF5I	GGATG	3 cut(s)	145, 321, 427
BstKTI	GATC	8 cut(s)	45, 50, 99, 111, 116, 204, 310, 379
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	8 cut(s)	42, 47, 96, 108, 113, 201, 307, 376
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	3 cut(s)	99, 135, 296
BstX2I	RGATCY	4 cut(s)	42, 96, 108, 307
BstXI	CCANNNNNNTGG	1 cut(s)	452
BstYI	RGATCY	4 cut(s)	42, 96, 108, 307
BsuRI	GGCC	5 cut(s)	56, 104, 280, 296, 433
BtsCI	GGATG	3 cut(s)	145, 321, 427
Cac8I	GCNNGC	1 cut(s)	462
CaiI	CAGNNNCTG	1 cut(s)	100
Cfr13I	GGNCC	3 cut(s)	194, 268, 278
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	8 cut(s)	56, 104, 259, 280, 296, 365, 433, 464
CviKI_1	RGCY	8 cut(s)	56, 104, 259, 280, 296, 365, 433, 464
CviQI	GTAC	1 cut(s)	184
DpnI	GATC	8 cut(s)	44, 49, 98, 110, 115, 203, 309, 378
DpnII	GATC	8 cut(s)	42, 47, 96, 108, 113, 201, 307, 376
EaeI	YGGCCR	2 cut(s)	102, 431
Eco130I	CCWWGG	1 cut(s)	272
Eco24I	GRGCYC	1 cut(s)	261
Eco47I	GGWCC	2 cut(s)	194, 268
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	272
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	1 cut(s)	220
FaiI	YATR	2 cut(s)	218, 384
FaqI	GGGAC	2 cut(s)	227, 254
FatI	CATG	1 cut(s)	216
FokI	GGATG	3 cut(s)	152, 328, 434
FriOI	GRGCYC	1 cut(s)	261
HaeIII	GGCC	5 cut(s)	56, 104, 280, 296, 433
HapII	CCGG	2 cut(s)	137, 297
Hin1II	CATG	1 cut(s)	220
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	2 cut(s)	137, 297
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	6 cut(s)	47, 52, 96, 113, 118, 194
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	3 cut(s)	219, 298, 316
HpyCH4IV	ACGT	2 cut(s)	177, 182
HpyCH4V	TGCA	2 cut(s)	352, 460
HpySE526I	ACGT	2 cut(s)	177, 182
Hsp92II	CATG	1 cut(s)	220
KflI	GGGWCCC	1 cut(s)	268
Kzo9I	GATC	8 cut(s)	42, 47, 96, 108, 113, 201, 307, 376
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	9 cut(s)	20, 25, 83, 86, 113, 150, 310, 351, 396
LweI	GCATC	1 cut(s)	240
MaeII	ACGT	2 cut(s)	177, 182
MaeIII	GTNAC	4 cut(s)	122, 167, 178, 439
MalI	GATC	8 cut(s)	44, 49, 98, 110, 115, 203, 309, 378
MboI	GATC	8 cut(s)	42, 47, 96, 108, 113, 201, 307, 376
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	4 cut(s)	42, 96, 108, 307
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	3 cut(s)	162, 208, 337
MnlI	CCTC	6 cut(s)	46, 76, 283, 286, 379, 420
MseI	TTAA	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	450
MspI	CCGG	2 cut(s)	137, 297
MspR9I	CCNGG	3 cut(s)	101, 137, 298
MvaI	CCWGG	1 cut(s)	101
NciI	CCSGG	2 cut(s)	137, 298
NdeII	GATC	8 cut(s)	42, 47, 96, 108, 113, 201, 307, 376
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	7 cut(s)	44, 157, 196, 260, 269, 270, 279
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	4 cut(s)	122, 167, 178, 439
PfeI	GAWTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	7 cut(s)	44, 157, 196, 260, 269, 270, 279
PspPI	GGNCC	3 cut(s)	194, 268, 278
PspPPI	RGGWCCY	1 cut(s)	268
PsrI	GAACNNNNNNTAC	2 cut(s)	167, 199
PstNI	CAGNNNCTG	1 cut(s)	100
PsuI	RGATCY	4 cut(s)	42, 96, 108, 307
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	77
Sau3AI	GATC	8 cut(s)	42, 47, 96, 108, 113, 201, 307, 376
Sau96I	GGNCC	3 cut(s)	194, 268, 278
ScrFI	CCNGG	3 cut(s)	101, 137, 298
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	5 cut(s)	180, 185, 327, 415, 431
SfaNI	GCATC	1 cut(s)	240
SinI	GGWCC	2 cut(s)	194, 268
SmiMI	CAYNNNNRTG	1 cut(s)	450
Sse9I	AATT	3 cut(s)	162, 208, 337
StyD4I	CCNGG	3 cut(s)	99, 135, 296
StyI	CCWWGG	1 cut(s)	272
TaiI	ACGT	2 cut(s)	180, 185
TaqI	TCGA	2 cut(s)	81, 204
TasI	AATT	3 cut(s)	162, 208, 337
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TseFI	GTSAC	4 cut(s)	122, 167, 178, 439
Tsp45I	GTSAC	4 cut(s)	122, 167, 178, 439
TspDTI	ATGAA	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	369
VpaK11BI	GGWCC	2 cut(s)	194, 268
XapI	RAATTY	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.