Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Reverse (-)

57663438 .. 57666555

Gene Structure 3118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0445700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTTCTCAGGCAGCCAATTCGACGCCACCTCCGCCTTCGGCGGCGGCGGGTTCATGTCTTCTCAGGCCACTCAACACGGCGATTCCAATCCCTCCGCTGCTAGGAGTCGTGAAAGTCACGGACTGGTTCCTGTGACGGTGAAGCAGATAAGCGAGGCTTATCAGTCTGGTGATGAGAAATCAAACTTTGTGATCGGCGGTGCTGATGTGGCCAATGTATCTGTGGTTGGGATGGTCTTTGAGAAAACCGAGAAGACCACTGATGTTTCCATTACTGTCGATGATGGAACGGGGCGAATCAAATGCCGGAGATGGGTCAATGAGAATTTTGACTCACAAGAAATGGAGGAAATACAAGATGGAATGTATGTTCGTGTCAATGGACATCTGAAAGCCTTTCAAGGTGTTCGACAGATAGTTGCATTCTCTGTGAGGCCTGTGAAGAACTTTGATGAAGTTGCCTTCCACTACATTGAGTGCATATATAACCATTTACAGTTACAGAAGCTCCAAGGAAATGCTGTTAATCAACCTCAGCCTATGGGATCATCTGTGTACACTCCTGTGAAGAGTGAGCCAAGTGGATATCAGACAGCCTCATCAAACCAATTCTCGGGGCAGCTTACTATTGATGGACGAATGAGCGCTCCTGAATTGATCCTTGAATATTTGTCGCAGCCTTCAAGCATTGAGAGTGCAAACGGAACATCGACAGAAGAGCTTTCCCAGCGCCTAAAACTCTCCATGGACAAGATCTTGGTTGGTATCAAGTCTCTTGATGACGAAGGCCTAGTATATTCCACAATCGATGATTCTCACTTCAAGAAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0033843 GO:0034637 GO:0034645 GO:0035252 GO:0040007 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

277

Amino Acids

30.28

Weight (kDa)

5.09

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	73 - 146	2.7e-10	OB-fold nucleic acid binding domain
RPA_C	PF08784	164 - 271	6.3e-12	Replication protein A C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	33, 42, 45, 48, 96, 198
AclWI	GGATC	2 cut(s)	553, 652
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	325
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	557
AfeI	AGCGCT	1 cut(s)	646
AfiI	CCNNNNNNNGG	3 cut(s)	102, 313, 613
AgsI	TTSAA	4 cut(s)	401, 665, 684, 823
AleI	CACNNNNGTG	1 cut(s)	563
AloI	GAACNNNNNNTCC	2 cut(s)	354, 386
AluBI	AGCT	3 cut(s)	508, 622, 721
AluI	AGCT	3 cut(s)	508, 622, 721
Alw26I	GTCTC	1 cut(s)	777
AlwI	GGATC	2 cut(s)	553, 652
Ama87I	CYCGRG	1 cut(s)	613
Aor51HI	AGCGCT	1 cut(s)	646
AoxI	GGCC	4 cut(s)	66, 210, 434, 787
ApeKI	GCWGC	4 cut(s)	12, 98, 619, 676
ApoI	RAATTY	1 cut(s)	325
AspLEI	GCGC	2 cut(s)	647, 732
AsuHPI	GGTGA	2 cut(s)	151, 182
AvaI	CYCGRG	1 cut(s)	613
BalI	TGGCCA	1 cut(s)	212
BbsI	GAAGAC	2 cut(s)	51, 260
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	4 cut(s)	24, 85, 631, 688
BccI	CCATC	5 cut(s)	226, 278, 306, 353, 626
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	3 cut(s)	35, 285, 319
BcoDI	GTCTC	1 cut(s)	777
BfaI	CTAG	2 cut(s)	102, 791
BfoI	RGCGCY	2 cut(s)	648, 733
BglII	AGATCT	1 cut(s)	753
BisI	GCNGC	6 cut(s)	13, 43, 46, 99, 620, 677
BlsI	GCNGC	6 cut(s)	14, 44, 47, 100, 621, 678
BmeT110I	CYCGRG	1 cut(s)	613
BmiI	GGNNCC	1 cut(s)	129
BpiI	GAAGAC	2 cut(s)	51, 260
Bpu10I	CCTNAGC	1 cut(s)	534
Bsa29I	ATCGAT	1 cut(s)	807
BsaBI	GATNNNNATC	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	511, 744
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 492, 522
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 313, 613
Bse1I	ACTGG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	87
BseCI	ATCGAT	1 cut(s)	807
BseDI	CCNNGG	2 cut(s)	511, 744
BseGI	GGATG	1 cut(s)	237
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	3 cut(s)	102, 313, 613
BseMII	CTCAG	3 cut(s)	21, 77, 548
BseNI	ACTGG	1 cut(s)	129
BseXI	GCAGC	4 cut(s)	24, 85, 631, 688
BseYI	CCCAGC	1 cut(s)	726
BshFI	GGCC	4 cut(s)	68, 212, 436, 789
BshVI	ATCGAT	1 cut(s)	807
BsiHKCI	CYCGRG	1 cut(s)	613
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	3 cut(s)	102, 313, 613
BsmAI	GTCTC	1 cut(s)	777
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	4 cut(s)	68, 212, 436, 789
BsoBI	CYCGRG	1 cut(s)	613
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	4 cut(s)	192, 545, 657, 753
Bsp19I	CCATGG	1 cut(s)	744
BspACI	CCGC	6 cut(s)	33, 42, 45, 48, 96, 198
BspANI	GGCC	4 cut(s)	68, 212, 436, 789
BspCNI	CTCAG	3 cut(s)	20, 76, 547
BspDI	ATCGAT	1 cut(s)	807
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	2 cut(s)	553, 652
BspQI	GCTCTTC	1 cut(s)	711
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	511, 744
BssMI	GATC	4 cut(s)	192, 545, 657, 753
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	2 cut(s)	511, 744
Bst4CI	ACNGT	3 cut(s)	139, 277, 498
Bst6I	CTCTTC	2 cut(s)	563, 711
BstACI	GRCGYC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	555
BstDEI	CTNAG	3 cut(s)	7, 63, 534
BstDSI	CCRYGG	1 cut(s)	744
BstF5I	GGATG	1 cut(s)	237
BstH2I	RGCGCY	2 cut(s)	648, 733
BstHHI	GCGC	2 cut(s)	647, 732
BstKTI	GATC	4 cut(s)	195, 548, 660, 756
BstMAI	GTCTC	1 cut(s)	777
BstMBI	GATC	4 cut(s)	192, 545, 657, 753
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 209, 727
BstV1I	GCAGC	4 cut(s)	24, 85, 631, 688
BstV2I	GAAGAC	2 cut(s)	51, 260
BstX2I	RGATCY	1 cut(s)	753
BstYI	RGATCY	1 cut(s)	753
Bsu15I	ATCGAT	1 cut(s)	807
BsuRI	GGCC	4 cut(s)	68, 212, 436, 789
BsuTUI	ATCGAT	1 cut(s)	807
BtgI	CCRYGG	1 cut(s)	744
BtsCI	GGATG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	258
CfoI	GCGC	2 cut(s)	647, 732
ClaI	ATCGAT	1 cut(s)	807
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	2 cut(s)	55, 745
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	3 cut(s)	7, 63, 534
DpnI	GATC	4 cut(s)	194, 547, 659, 755
DpnII	GATC	4 cut(s)	192, 545, 657, 753
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	563, 711
EarI	CTCTTC	2 cut(s)	563, 711
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	511, 744
Eco147I	AGGCCT	2 cut(s)	436, 789
Eco32I	GATATC	1 cut(s)	587
Eco47III	AGCGCT	1 cut(s)	646
Eco88I	CYCGRG	1 cut(s)	613
EcoRV	GATATC	1 cut(s)	587
EcoT14I	CCWWGG	2 cut(s)	511, 744
ErhI	CCWWGG	2 cut(s)	511, 744
FaeI	CATG	2 cut(s)	58, 748
FaiI	YATR	8 cut(s)	56, 369, 482, 484, 486, 542, 746, 796
FalI	AAGNNNNNCTT	2 cut(s)	142, 174
FatI	CATG	2 cut(s)	54, 744
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	6 cut(s)	13, 43, 46, 99, 620, 677
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	6 cut(s)	13, 43, 46, 99, 620, 677
FspBI	CTAG	2 cut(s)	102, 791
GlaI	GCGC	2 cut(s)	646, 731
GluI	GCNGC	6 cut(s)	13, 43, 46, 99, 620, 677
GsaI	CCCAGC	1 cut(s)	730
HaeII	RGCGCY	2 cut(s)	648, 733
HaeIII	GGCC	4 cut(s)	68, 212, 436, 789
HapII	CCGG	1 cut(s)	307
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	2 cut(s)	647, 732
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	58, 748
Hin6I	GCGC	2 cut(s)	645, 730
HinP1I	GCGC	2 cut(s)	645, 730
HinfI	GANTC	5 cut(s)	83, 106, 297, 332, 812
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	2 cut(s)	151, 182
Hpy166II	GTNNAC	2 cut(s)	556, 558
Hpy188I	TCNGA	2 cut(s)	390, 591
Hpy188III	TCNNGA	4 cut(s)	110, 650, 776, 823
Hpy8I	GTNNAC	2 cut(s)	556, 558
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	4 cut(s)	46, 472, 690, 779
HpyCH4III	ACNGT	3 cut(s)	139, 277, 498
HpyCH4V	TGCA	3 cut(s)	422, 480, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 209, 727
HpyF3I	CTNAG	3 cut(s)	7, 63, 534
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	58, 748
HspAI	GCGC	2 cut(s)	645, 730
Kzo9I	GATC	4 cut(s)	192, 545, 657, 753
LguI	GCTCTTC	1 cut(s)	711
LmnI	GCTCC	2 cut(s)	513, 652
LpnPI	CCDG	9 cut(s)	50, 110, 144, 153, 320, 450, 576, 663, 740
Lsp1109I	GCAGC	4 cut(s)	24, 85, 631, 688
MaeI	CTAG	2 cut(s)	102, 791
MaeIII	GTNAC	3 cut(s)	116, 133, 498
MalI	GATC	4 cut(s)	194, 547, 659, 755
MboI	GATC	4 cut(s)	192, 545, 657, 753
MboII	GAAGA	5 cut(s)	51, 265, 454, 580, 728
MflI	RGATCY	1 cut(s)	753
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	4 cut(s)	17, 325, 608, 653
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	115, 326
MnlI	CCTC	7 cut(s)	40, 103, 148, 340, 426, 543, 607
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	563
Msp20I	TGGCCA	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	422
MwoI	GCNNNNNNNGC	3 cut(s)	32, 209, 727
NcoI	CCATGG	1 cut(s)	744
NdeII	GATC	4 cut(s)	192, 545, 657, 753
NlaIII	CATG	2 cut(s)	58, 748
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	2 cut(s)	116, 133
OliI	CACNNNNGTG	1 cut(s)	563
PceI	AGGCCT	2 cut(s)	436, 789
PciSI	GCTCTTC	1 cut(s)	711
PctI	GAATGC	1 cut(s)	422
PfeI	GAWTC	3 cut(s)	83, 297, 812
PkrI	GCNGC	6 cut(s)	14, 44, 47, 100, 621, 678
PleI	GAGTC	2 cut(s)	114, 326
PpsI	GAGTC	2 cut(s)	114, 326
PspFI	CCCAGC	1 cut(s)	726
PspN4I	GGNNCC	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	753
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
RseI	CAYNNNNRTG	1 cut(s)	563
SapI	GCTCTTC	1 cut(s)	711
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	6 cut(s)	13, 43, 46, 99, 620, 677
Sau3AI	GATC	4 cut(s)	192, 545, 657, 753
SchI	GAGTC	2 cut(s)	115, 326
SetI	ASST	6 cut(s)	32, 406, 510, 535, 624, 723
SmiMI	CAYNNNNRTG	1 cut(s)	563
Sse9I	AATT	4 cut(s)	17, 325, 608, 653
SseBI	AGGCCT	2 cut(s)	436, 789
SsiI	CCGC	6 cut(s)	33, 42, 45, 48, 96, 198
SspI	AATATT	1 cut(s)	668
SspMI	CTAG	2 cut(s)	102, 791
StuI	AGGCCT	2 cut(s)	436, 789
StyI	CCWWGG	2 cut(s)	511, 744
TaaI	ACNGT	3 cut(s)	139, 277, 498
TaqI	TCGA	5 cut(s)	21, 279, 409, 710, 807
TasI	AATT	4 cut(s)	17, 325, 608, 653
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	2 cut(s)	45, 48
TfiI	GAWTC	3 cut(s)	83, 297, 812
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	2 cut(s)	116, 133
TseI	GCWGC	4 cut(s)	12, 98, 619, 676
Tsp45I	GTSAC	2 cut(s)	116, 133
TspDTI	ATGAA	2 cut(s)	43, 468
TspGWI	ACGGA	2 cut(s)	135, 717
TspRI	CASTG	1 cut(s)	265
XapI	RAATTY	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XspI	CTAG	2 cut(s)	102, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.