Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Reverse (-)

3362116 .. 3362481

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG048300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGATCAATCGATGGGGTACGAGTACCTGAGAGGCCGTCCCAACTTTGTGAAGCAGCTGACCGGAACAGATGTGGATGACAGACTTTCAGTGACTAGTGAGATGGCTTGGAAGATGCCTCCTGCAAAACCAGGACATGACATTCCAATCAGAGTCTTGGACGATCAGGGTGACGTTTATCAATTCTGCTTGGCTGGAAGAAACGGCAACTATCCGAAACCAACTTTCCAGCGCAAAGACTGGGGAGCTTTCATCAAAAAGCGAGGAGCCAAAGAAGGCGACTCCCTCTATTTCTGGCCAGAGGTGAATGAAAGCAAGCATACGGAATACCGCATCGAAGTGATCTCATTCATAAATGTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.99

Weight (kDa)

6.73

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	331
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	296
AfaI	GTAC	2 cut(s)	20, 26
AhlI	ACTAGT	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	2 cut(s)	58, 248
AluI	AGCT	2 cut(s)	58, 248
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	34, 296
ApeKI	GCWGC	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	234
AsuHPI	GGTGA	2 cut(s)	182, 316
BalI	TGGCCA	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	2 cut(s)	7, 97
BceAI	ACGGC	2 cut(s)	21, 220
BciT130I	CCWGG	1 cut(s)	132
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	1 cut(s)	96
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	2 cut(s)	105, 342
BmuI	ACTGGG	1 cut(s)	250
Bsa29I	ATCGAT	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	132
BseCI	ATCGAT	1 cut(s)	11
BseGI	GGATG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	2 cut(s)	36, 298
BshVI	ATCGAT	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	36, 298
Bsp143I	GATC	3 cut(s)	4, 163, 342
BspACI	CCGC	1 cut(s)	331
BspANI	GGCC	2 cut(s)	36, 298
BspCNI	CTCAG	1 cut(s)	21
BspDI	ATCGAT	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	245
BssMI	GATC	3 cut(s)	4, 163, 342
Bst2UI	CCWGG	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	3 cut(s)	7, 166, 345
BstMBI	GATC	3 cut(s)	4, 163, 342
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	67
Bsu15I	ATCGAT	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	36, 298
BsuTUI	ATCGAT	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	317
CfoI	GCGC	1 cut(s)	234
ClaI	ATCGAT	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	19, 25
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	7 cut(s)	36, 58, 107, 194, 248, 269, 298
CviKI_1	RGCY	7 cut(s)	36, 58, 107, 194, 248, 269, 298
CviQI	GTAC	2 cut(s)	19, 25
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	3 cut(s)	6, 165, 344
DpnII	GATC	3 cut(s)	4, 163, 342
EaeI	YGGCCR	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	130
FaeI	CATG	1 cut(s)	140
FaiI	YATR	3 cut(s)	138, 321, 353
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	36, 298
HapII	CCGG	1 cut(s)	63
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	140
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	2 cut(s)	153, 281
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	2 cut(s)	182, 316
Hpy188I	TCNGA	2 cut(s)	152, 216
HpyAV	CCTTC	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	140
HspAI	GCGC	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	4, 163, 342
LmnI	GCTCC	2 cut(s)	245, 266
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	2 cut(s)	105, 342
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	91, 170
MalI	GATC	3 cut(s)	6, 165, 344
MboI	GATC	3 cut(s)	4, 163, 342
MboII	GAAGA	2 cut(s)	124, 210
MlsI	TGGCCA	1 cut(s)	298
MluCI	AATT	1 cut(s)	182
MluNI	TGGCCA	1 cut(s)	298
MlyI	GAGTC	2 cut(s)	162, 275
MnlI	CCTC	5 cut(s)	26, 129, 257, 295, 296
Mox20I	TGGCCA	1 cut(s)	298
MscI	TGGCCA	1 cut(s)	298
MseI	TTAA	1 cut(s)	364
MslI	CAYNNNNRTG	1 cut(s)	338
Msp20I	TGGCCA	1 cut(s)	298
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	4, 163, 342
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	2 cut(s)	91, 170
PkrI	GCNGC	1 cut(s)	57
PleI	GAGTC	2 cut(s)	161, 275
PpsI	GAGTC	2 cut(s)	161, 275
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	2 cut(s)	20, 26
RsaNI	GTAC	2 cut(s)	19, 25
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	364
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	3 cut(s)	4, 163, 342
SchI	GAGTC	2 cut(s)	162, 275
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	5 cut(s)	30, 60, 177, 250, 306
SfaNI	GCATC	2 cut(s)	105, 342
SmiMI	CAYNNNNRTG	1 cut(s)	338
SpeI	ACTAGT	1 cut(s)	95
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	1 cut(s)	331
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	130
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	11, 336
TasI	AATT	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	2 cut(s)	91, 170
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	2 cut(s)	91, 170
TspDTI	ATGAA	3 cut(s)	241, 324, 340
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	96
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.