Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Reverse (-)

29058722 .. 29059865

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGACTACCCCCACGGCCATGCCTGTGTGAAAAGGCTGACGCCATCTGATGTGAAAGGTAGACTTGCAGTGACTACAGAAATGGCCGGCATCTTGCCTGTTGCAGAGCCAGGAAGCAACATTCCAATCAGGGTCTTGGACGACTCCGGTCAAGTTTATCAGTTCTATTTGTCTGTTCGAAGAAATGGATATCGGAAACCAGTTTTCCAGGCCAAACAATGGAGAGCCTTCATTGATTACCGCGGAGCCGAAGTTGACGACAAAATTTATTTCTGGCGTCAGGTGGATGAACTTCAGCAAACACAATTTCGCATTTTTTTGTTCAAAAACTATCTTCCTCCCCACCCAGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.79

Weight (kDa)

9.1

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	61
AccII	CGCG	1 cut(s)	243
AciI	CCGC	2 cut(s)	241, 243
AcoI	YGGCCR	2 cut(s)	16, 84
AcsI	RAATTY	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	2 cut(s)	41, 277
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	109, 207
AoxI	GGCC	3 cut(s)	16, 84, 210
ApoI	RAATTY	1 cut(s)	264
AsuII	TTCGAA	1 cut(s)	178
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	2 cut(s)	111, 209
BfmI	CTRYAG	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	111, 209
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	111, 209
BmsI	GCATC	1 cut(s)	99
BoxI	GACNNNNGTC	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	178
BsaHI	GRCGYC	2 cut(s)	41, 277
BsaJI	CCNNGG	2 cut(s)	13, 241
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	2 cut(s)	111, 209
BseDI	CCNNGG	2 cut(s)	13, 241
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	3 cut(s)	18, 86, 212
BsiSI	CCGG	2 cut(s)	87, 147
BslI	CCNNNNNNNGG	1 cut(s)	219
BsnI	GGCC	3 cut(s)	18, 86, 212
Bsp119I	TTCGAA	1 cut(s)	178
BspACI	CCGC	2 cut(s)	241, 243
BspANI	GGCC	3 cut(s)	18, 86, 212
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	247
BspT104I	TTCGAA	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	13, 241
BssNI	GRCGYC	2 cut(s)	41, 277
Bst2UI	CCWGG	2 cut(s)	111, 209
BstACI	GRCGYC	2 cut(s)	41, 277
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	88
BstDSI	CCRYGG	2 cut(s)	13, 241
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	243
BstNI	CCWGG	2 cut(s)	111, 209
BstPAI	GACNNNNGTC	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	109, 207
BstSFI	CTRYAG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	18, 86, 212
BtgI	CCRYGG	2 cut(s)	13, 241
BtsCI	GGATG	1 cut(s)	292
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	86
Cfr42I	CCGCGG	1 cut(s)	244
CseI	GACGC	2 cut(s)	49, 266
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	7 cut(s)	18, 37, 86, 109, 212, 227, 248
CviKI_1	RGCY	7 cut(s)	18, 37, 86, 109, 212, 227, 248
EaeI	YGGCCR	2 cut(s)	16, 84
Eco32I	GATATC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	109, 207
EcoRV	GATATC	1 cut(s)	191
FaeI	CATG	1 cut(s)	23
FaiI	YATR	1 cut(s)	21
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FatI	CATG	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	61
FokI	GGATG	1 cut(s)	299
HaeIII	GGCC	3 cut(s)	18, 86, 212
HapII	CCGG	2 cut(s)	87, 147
HgaI	GACGC	2 cut(s)	49, 266
Hin1I	GRCGYC	2 cut(s)	41, 277
Hin1II	CATG	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	2 cut(s)	87, 147
Hpy166II	GTNNAC	2 cut(s)	62, 256
Hpy188I	TCNGA	2 cut(s)	49, 195
Hpy8I	GTNNAC	2 cut(s)	62, 256
HpyAV	CCTTC	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	68, 104
Hsp92I	GRCGYC	2 cut(s)	41, 277
Hsp92II	CATG	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
KspI	CCGCGG	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	245
LweI	GCATC	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	70
MboII	GAAGA	2 cut(s)	192, 326
MluCI	AATT	2 cut(s)	264, 305
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	1 cut(s)	348
MroNI	GCCGGC	1 cut(s)	86
MslI	CAYNNNNRTG	3 cut(s)	18, 24, 348
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	2 cut(s)	87, 147
MspR9I	CCNGG	2 cut(s)	111, 209
MvaI	CCWGG	2 cut(s)	111, 209
MvnI	CGCG	1 cut(s)	243
NaeI	GCCGGC	1 cut(s)	88
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	178
PdiI	GCCGGC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	219
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PshAI	GACNNNNGTC	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	109, 207
PspGI	CCWGG	2 cut(s)	109, 207
PspN4I	GGNNCC	1 cut(s)	247
RseI	CAYNNNNRTG	3 cut(s)	18, 24, 348
SacII	CCGCGG	1 cut(s)	244
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	111, 209
SetI	ASST	2 cut(s)	61, 285
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	1 cut(s)	75
Sfr303I	CCGCGG	1 cut(s)	244
SfuI	TTCGAA	1 cut(s)	178
SgrBI	CCGCGG	1 cut(s)	244
SmiMI	CAYNNNNRTG	3 cut(s)	18, 24, 348
Sse9I	AATT	2 cut(s)	264, 305
SsiI	CCGC	2 cut(s)	241, 243
StyD4I	CCNGG	2 cut(s)	109, 207
TaqI	TCGA	1 cut(s)	178
TasI	AATT	2 cut(s)	264, 305
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	220, 303
TspRI	CASTG	1 cut(s)	75
Van91I	CCANNNNNTGG	1 cut(s)	219
XapI	RAATTY	1 cut(s)	264
XmiI	GTMKAC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.