Rmu_sc0003511.1_g000018

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003511.1
OG0000707
Physical Location & Seq
Forward (+)
91743 .. 92096
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003511.1_g000018.1.cds

Sequence Viewer

Length: 354 bp
atggagtacgagtacctgagaggccgtcccaactttgtgaagcagctgaccgaaacagatgtggatgacagactttcagtgactagtgagatggctcagaagatgcctcctgcaaaaccaggccgtggcattccaatcagagtcttggacgatcagggtgacgcttatcagttctgcttgactggaagaaacggcaactatccgaaaccaactttccagcgcaaagactggggagctttcatcaaaaagcgaggagccaaagaaggcgactccctctatttctggaaagaggtgaatgaaagtaagaatacggaataccgcatcgaagtgatctcattcataaatgttgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.59

Weight (kDa)

8.66

Isoelectric Point (pI)

27.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 125
AciI CCGC 1 cut(s) 319
AfaI GTAC 2 cut(s) 8, 14
AfiI CCNNNNNNNGG 1 cut(s) 125
AhlI ACTAGT 1 cut(s) 83
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 2 cut(s) 46, 236
AluI AGCT 2 cut(s) 46, 236
AoxI GGCC 2 cut(s) 22, 121
ApeKI GCWGC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 170, 304
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 85
BceAI ACGGC 3 cut(s) 9, 108, 208
BciT130I CCWGG 1 cut(s) 120
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 2 cut(s) 93, 330
BmuI ACTGGG 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 124
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 187, 233
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 2 cut(s) 8, 110
BseNI ACTGG 2 cut(s) 187, 233
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 24, 123
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 12
BsmI GAATGC 1 cut(s) 129
BsnI GGCC 2 cut(s) 24, 123
Bsp143I GATC 2 cut(s) 151, 330
BspACI CCGC 1 cut(s) 319
BspANI GGCC 2 cut(s) 24, 123
BspCNI CTCAG 2 cut(s) 9, 109
BspLI GGNNCC 1 cut(s) 256
BsrI ACTGG 2 cut(s) 187, 233
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 2 cut(s) 151, 330
Bst2UI CCWGG 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 17, 96
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 2 cut(s) 154, 333
BstMBI GATC 2 cut(s) 151, 330
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 55
BsuRI GGCC 2 cut(s) 24, 123
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 84
CfoI GCGC 1 cut(s) 222
CseI GACGC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 7, 13
CviJI RGCY 6 cut(s) 24, 46, 95, 123, 236, 257
CviKI_1 RGCY 6 cut(s) 24, 46, 95, 123, 236, 257
CviQI GTAC 2 cut(s) 7, 13
DdeI CTNAG 2 cut(s) 17, 96
DpnI GATC 2 cut(s) 153, 332
DpnII GATC 2 cut(s) 151, 330
EcoRII CCWGG 1 cut(s) 118
FaiI YATR 1 cut(s) 341
FaqI GGGAC 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 44
FspBI CTAG 1 cut(s) 84
GlaI GCGC 1 cut(s) 221
GluI GCNGC 1 cut(s) 44
HaeIII GGCC 2 cut(s) 24, 123
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 222
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HinfI GANTC 2 cut(s) 141, 269
HphI GGTGA 2 cut(s) 170, 304
Hpy188I TCNGA 3 cut(s) 99, 140, 204
Hpy188III TCNNGA 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 17, 96
HspAI GCGC 1 cut(s) 220
Kzo9I GATC 2 cut(s) 151, 330
LmnI GCTCC 2 cut(s) 233, 254
LpnPI CCDG 9 cut(s) 29, 105, 123, 132, 140, 168, 214, 230, 268
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 2 cut(s) 93, 330
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 79, 158
MalI GATC 2 cut(s) 153, 332
MboI GATC 2 cut(s) 151, 330
MboII GAAGA 2 cut(s) 112, 198
MlyI GAGTC 2 cut(s) 150, 263
MnlI CCTC 5 cut(s) 14, 117, 245, 283, 284
MseI TTAA 1 cut(s) 352
MslI CAYNNNNRTG 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 129
MvaI CCWGG 1 cut(s) 120
NdeII GATC 2 cut(s) 151, 330
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 2 cut(s) 79, 158
PctI GAATGC 1 cut(s) 129
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 1 cut(s) 45
PleI GAGTC 2 cut(s) 149, 263
PpsI GAGTC 2 cut(s) 149, 263
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 2 cut(s) 8, 14
RsaNI GTAC 2 cut(s) 7, 13
RseI CAYNNNNRTG 1 cut(s) 326
SaqAI TTAA 1 cut(s) 352
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 2 cut(s) 151, 330
SchI GAGTC 2 cut(s) 150, 263
ScrFI CCNGG 1 cut(s) 120
SetI ASST 4 cut(s) 18, 48, 238, 294
SfaNI GCATC 2 cut(s) 93, 330
SmiMI CAYNNNNRTG 1 cut(s) 326
SpeI ACTAGT 1 cut(s) 83
SsiI CCGC 1 cut(s) 319
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 118
TaqI TCGA 1 cut(s) 324
TaqII GACCGA 1 cut(s) 65
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 2 cut(s) 79, 158
TseI GCWGC 1 cut(s) 43
Tsp45I GTSAC 2 cut(s) 79, 158
TspDTI ATGAA 3 cut(s) 229, 312, 328
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 125
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.