Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Reverse (-)

3265191 .. 3265544

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG048000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCTCGCCTGATGCCTGCTGCAAAACCTGGAAGTGACACTGCAATCCGAGTCTTGGACGGTAAGGGTGACAAGTATCAGTTCTACTTGGCTGGAAGAAGAGGCGAATATAGGAAACCAATTTTCAAGCGCAAAGACTGGAGAGCCTTCATCAAAAAACGAGGAGCCAAAGCTGGCAACTCCCTCTATTTCTGGCGAGAGGTGAACGAAAGTAAGCGTACGGAATACCGCATCGAAGTGATCTCATCCAGAAATGGTGATTATCCTCACCCAGAAGGTCTTGGATCTTCCAACCCGCCTTCTGAATCTCGAGAAGATTTGAGGACTTGGGCCGCCCACGGTCTAGCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

13.4

Weight (kDa)

10.09

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	229, 296, 333
AclWI	GGATC	1 cut(s)	292
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
AlwI	GGATC	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	309
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	4 cut(s)	80, 214, 260, 269
AvaI	CYCGRG	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	7
BciT130I	CCWGG	1 cut(s)	30
BfaI	CTAG	2 cut(s)	344, 352
BisI	GCNGC	2 cut(s)	21, 333
BlsI	GCNGC	2 cut(s)	22, 334
Bme1390I	CCNGG	1 cut(s)	30
BmeT110I	CYCGRG	1 cut(s)	309
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	2 cut(s)	3, 240
BpmI	CTGGAG	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	332
BsiHKCI	CYCGRG	1 cut(s)	309
BsiWI	CGTACG	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	55
BsnI	GGCC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	240, 284
BspACI	CCGC	3 cut(s)	229, 296, 333
BspANI	GGCC	1 cut(s)	332
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	2 cut(s)	240, 284
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	62, 341
Bst6I	CTCTTC	1 cut(s)	94
BstC8I	GCNNGC	3 cut(s)	7, 18, 175
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	2 cut(s)	243, 287
BstMBI	GATC	2 cut(s)	240, 284
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	7
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	332
BtgI	CCRYGG	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	245
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	3 cut(s)	7, 18, 175
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	219
CviJI	RGCY	6 cut(s)	5, 92, 146, 167, 173, 332
CviKI_1	RGCY	6 cut(s)	5, 92, 146, 167, 173, 332
CviQI	GTAC	1 cut(s)	219
DpnI	GATC	2 cut(s)	242, 286
DpnII	GATC	2 cut(s)	240, 284
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	28
FaiI	YATR	1 cut(s)	111
FauI	CCCGC	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	21, 333
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	2 cut(s)	21, 333
FspBI	CTAG	2 cut(s)	344, 352
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	2 cut(s)	21, 333
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	332
HhaI	GCGC	1 cut(s)	132
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HinfI	GANTC	2 cut(s)	51, 305
HphI	GGTGA	4 cut(s)	80, 214, 260, 269
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	50, 304
Hpy188III	TCNNGA	3 cut(s)	249, 309, 311
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	3 cut(s)	157, 269, 309
HpyCH4III	ACNGT	2 cut(s)	62, 341
HpyCH4V	TGCA	2 cut(s)	23, 44
HspAI	GCGC	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	240, 284
LmnI	GCTCC	1 cut(s)	164
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	2 cut(s)	3, 240
MaeI	CTAG	2 cut(s)	344, 352
MaeIII	GTNAC	2 cut(s)	35, 68
MalI	GATC	2 cut(s)	242, 286
MboI	GATC	2 cut(s)	240, 284
MboII	GAAGA	4 cut(s)	108, 111, 279, 326
MflI	RGATCY	1 cut(s)	284
MluCI	AATT	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	6 cut(s)	95, 155, 193, 194, 276, 315
MslI	CAYNNNNRTG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
NdeII	GATC	2 cut(s)	240, 284
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	35, 68
PaeR7I	CTCGAG	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	305
Pfl23II	CGTACG	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	22, 334
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspLI	CGTACG	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	330
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	236
SatI	GCNGC	2 cut(s)	21, 333
Sau3AI	GATC	2 cut(s)	240, 284
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	30
SetI	ASST	4 cut(s)	31, 175, 204, 280
SfaNI	GCATC	2 cut(s)	3, 240
Sfr274I	CTCGAG	1 cut(s)	309
SlaI	CTCGAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	3 cut(s)	229, 296, 333
SspMI	CTAG	2 cut(s)	344, 352
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	62, 341
TaqI	TCGA	2 cut(s)	234, 310
TasI	AATT	1 cut(s)	120
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	305
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	2 cut(s)	35, 68
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	2 cut(s)	35, 68
TspDTI	ATGAA	1 cut(s)	139
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	1 cut(s)	46
XhoI	CTCGAG	1 cut(s)	309
XspI	CTAG	2 cut(s)	344, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.