Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Reverse (-)

14502842 .. 14503382

Gene Structure 541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G118300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGATGTCTCTCAAAGACTTGGAGTCACCACGGAAATGCTGAATGAGCTGCCTCTTTACAATCGAGAGCATGATGTCGCTTATAGAGCAGATTATCAATCCATGGAGATGGAGCATGACCGTGTTGAGAAAGTGTTGAAGGCCAGCGATGTTGAAAGACTTGGGGTGACCACCACCATGCTTGAAATGCTGCCTCCGGAGGATCCAGATCGTGATATCCCGATCAGAGTTTTCGACAACCAGAAGTGGAAGGTTTACGGGTTCAAATTATCCAGCAGACAACGGGGCAGATACAAAAACCCAGTTTTCCAGTCTAGAGGATGGAGAGTGTTTGTCAATGACAGAGGGATTGCAGCTGGGGACGTGCTCTATTTCTGGGAGGAGGAAGACCCATTTCATGGAACTCAATATCGCATTGCACTCTACAAGCCAAAACTTTTCCCTTGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

17.79

Weight (kDa)

5.95

Isoelectric Point (pI)

23.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccIII	TCCGGA	1 cut(s)	196
AclWI	GGATC	2 cut(s)	197, 210
AfiI	CCNNNNNNNGG	1 cut(s)	398
AgsI	TTSAA	4 cut(s)	139, 155, 185, 265
AhdI	GACNNNNNGTC	1 cut(s)	23
AjiI	CACGTC	1 cut(s)	364
AluBI	AGCT	2 cut(s)	49, 356
AluI	AGCT	2 cut(s)	49, 356
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	197, 210
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	3 cut(s)	49, 190, 353
AsuHPI	GGTGA	2 cut(s)	19, 178
BamHI	GGATCC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	3 cut(s)	36, 177, 365
BccI	CCATC	2 cut(s)	103, 315
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	315
BisI	GCNGC	3 cut(s)	50, 191, 354
BlsI	GCNGC	3 cut(s)	51, 192, 355
BmeRI	GACNNNNNGTC	1 cut(s)	23
BmgBI	CACGTC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	204
BmrI	ACTGGG	1 cut(s)	296
BmuI	ACTGGG	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	30, 102
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse1I	ACTGG	2 cut(s)	302, 310
Bse3DI	GCAATG	1 cut(s)	414
Bse8I	GATNNNNATC	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	30, 102
BseGI	GGATG	2 cut(s)	10, 326
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMI	GCAATG	1 cut(s)	414
BseNI	ACTGG	2 cut(s)	302, 310
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	3 cut(s)	36, 177, 365
BseYI	CCCAGC	1 cut(s)	356
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	202, 208, 222
Bsp19I	CCATGG	1 cut(s)	102
BspANI	GGCC	1 cut(s)	143
BspEI	TCCGGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	204
BspPI	GGATC	2 cut(s)	197, 210
BsrDI	GCAATG	1 cut(s)	414
BsrI	ACTGG	2 cut(s)	302, 310
BssECI	CCNNGG	2 cut(s)	30, 102
BssMI	GATC	3 cut(s)	202, 208, 222
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	145
BstDSI	CCRYGG	2 cut(s)	30, 102
BstEII	GGTNACC	1 cut(s)	166
BstF5I	GGATG	2 cut(s)	10, 326
BstKTI	GATC	3 cut(s)	205, 211, 225
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	3 cut(s)	202, 208, 222
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 86, 187
BstPI	GGTNACC	1 cut(s)	166
BstV1I	GCAGC	3 cut(s)	36, 177, 365
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	2 cut(s)	30, 102
BtgZI	GCGATG	1 cut(s)	162
BtrI	CACGTC	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	10, 326
Cac8I	GCNNGC	1 cut(s)	145
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviAII	CATG	5 cut(s)	71, 103, 116, 178, 398
CviJI	RGCY	4 cut(s)	49, 143, 356, 430
CviKI_1	RGCY	4 cut(s)	49, 143, 356, 430
DpnI	GATC	3 cut(s)	204, 210, 224
DpnII	GATC	3 cut(s)	202, 208, 222
DriI	GACNNNNNGTC	1 cut(s)	23
Eam1105I	GACNNNNNGTC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	217
Eco91I	GGTNACC	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	166
EcoRV	GATATC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	5 cut(s)	74, 106, 119, 181, 401
FaiI	YATR	6 cut(s)	72, 84, 104, 117, 179, 399
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	5 cut(s)	70, 102, 115, 177, 397
Fnu4HI	GCNGC	3 cut(s)	50, 191, 354
FokI	GGATG	2 cut(s)	17, 333
Fsp4HI	GCNGC	3 cut(s)	50, 191, 354
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	3 cut(s)	50, 191, 354
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	5 cut(s)	74, 106, 119, 181, 401
HinfI	GANTC	1 cut(s)	24
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	19, 178
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	6 cut(s)	65, 197, 206, 212, 220, 315
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	133, 244
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	2 cut(s)	353, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 86, 187
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	5 cut(s)	74, 106, 119, 181, 401
Kpn2I	TCCGGA	1 cut(s)	196
Kzo9I	GATC	3 cut(s)	202, 208, 222
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	9 cut(s)	157, 210, 219, 254, 286, 315, 323, 342, 361
Lsp1109I	GCAGC	3 cut(s)	36, 177, 365
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	25, 166
MalI	GATC	3 cut(s)	204, 210, 224
MboI	GATC	3 cut(s)	202, 208, 222
MboII	GAAGA	1 cut(s)	398
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	33
MnlI	CCTC	7 cut(s)	63, 193, 204, 311, 338, 373, 376
MroI	TCCGGA	1 cut(s)	196
MseI	TTAA	1 cut(s)	451
MslI	CAYNNNNRTG	4 cut(s)	35, 107, 120, 176
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	46, 86, 187
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	202, 208, 222
NlaIII	CATG	5 cut(s)	74, 106, 119, 181, 401
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	2 cut(s)	25, 166
PflMI	CCANNNNNTGG	1 cut(s)	398
PkrI	GCNGC	3 cut(s)	51, 192, 355
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PspEI	GGTNACC	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	356
RseI	CAYNNNNRTG	4 cut(s)	35, 107, 120, 176
SaqAI	TTAA	1 cut(s)	451
SatI	GCNGC	3 cut(s)	50, 191, 354
Sau3AI	GATC	3 cut(s)	202, 208, 222
SchI	GAGTC	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	4 cut(s)	51, 255, 358, 366
SmiMI	CAYNNNNRTG	4 cut(s)	35, 107, 120, 176
Sse9I	AATT	1 cut(s)	266
SspMI	CTAG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	2 cut(s)	64, 234
TasI	AATT	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	451
Tru9I	TTAA	1 cut(s)	451
TseFI	GTSAC	2 cut(s)	25, 166
TseI	GCWGC	3 cut(s)	49, 190, 353
Tsp45I	GTSAC	2 cut(s)	25, 166
TspDTI	ATGAA	1 cut(s)	386
TspGWI	ACGGA	1 cut(s)	47
Van91I	CCANNNNNTGG	1 cut(s)	398
XbaI	TCTAGA	1 cut(s)	314
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.