Rmu_sc0003511.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003511.1
OG0000707
Physical Location & Seq
Forward (+)
47374 .. 47787
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003511.1_g000009.1.cds

Sequence Viewer

Length: 414 bp
atggagctcgagtacctgagaggccgtccaaagtttgtgaaaaagctgacgcaaacagatgtggatgacagacttgtagtgactaaggagatgggtctcatgatgcctgacgcagatccagaacatgacactttaatcagagtgttggacgatgagggtgacgactatcagttctacttgtctgtaagaaagggccgaaatctcaaaccagttttccaggcccaaggatggaaagcattcatcacaaaacgaggagtcaaagttggcgacttcatctgtttctggccagaggtgaatgcaattaagcgtacagattaccgcatcaagttattcccattcacatgttatctttcccccaacccagaaggtctttcatcttccaagccatctgcacctgcagatgaacatgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.79

Weight (kDa)

6.73

Isoelectric Point (pI)

25.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 1 cut(s) 403
AciI CCGC 1 cut(s) 319
AclWI GGATC 1 cut(s) 110
AcoI YGGCCR 1 cut(s) 284
AfaI GTAC 2 cut(s) 14, 310
AfiI CCNNNNNNNGG 1 cut(s) 228
AflIII ACRYGT 1 cut(s) 341
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 2 cut(s) 7, 46
AluI AGCT 2 cut(s) 7, 46
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 8
AoxI GGCC 4 cut(s) 22, 193, 219, 284
Asp700I GAANNNNTTC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 193, 220
AsuHPI GGTGA 2 cut(s) 170, 304
AvaI CYCGRG 1 cut(s) 8
BalI TGGCCA 1 cut(s) 286
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 9
BccI CCATC 3 cut(s) 85, 222, 394
BceAI ACGGC 1 cut(s) 9
BciT130I CCWGG 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 396
BfuAI ACCTGC 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 193, 220
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 2 cut(s) 93, 330
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 3 cut(s) 26, 246, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 209
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 70, 233
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 8
BseNI ACTGG 1 cut(s) 209
BseRI GAGGAG 1 cut(s) 267
BsgI GTGCAG 1 cut(s) 375
BshFI GGCC 4 cut(s) 24, 195, 221, 286
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 101
BsmI GAATGC 2 cut(s) 236, 301
BsnI GGCC 4 cut(s) 24, 195, 221, 286
Bso31I GGTCTC 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 1 cut(s) 319
BspANI GGCC 4 cut(s) 24, 195, 221, 286
BspCNI CTCAG 1 cut(s) 9
BspHI TCATGA 1 cut(s) 99
BspMAI CTGCAG 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 101
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 218
BstDEI CTNAG 2 cut(s) 17, 84
BstF5I GGATG 2 cut(s) 70, 233
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 2 cut(s) 345, 410
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 4 cut(s) 24, 195, 221, 286
BtsCI GGATG 2 cut(s) 70, 233
BveI ACCTGC 1 cut(s) 403
CciI TCATGA 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 193, 220
CseI GACGC 2 cut(s) 58, 119
Csp6I GTAC 2 cut(s) 13, 309
CviAII CATG 5 cut(s) 100, 125, 342, 407, 411
CviJI RGCY 7 cut(s) 7, 24, 46, 195, 221, 286, 385
CviKI_1 RGCY 7 cut(s) 7, 24, 46, 195, 221, 286, 385
CviQI GTAC 2 cut(s) 13, 309
DdeI CTNAG 2 cut(s) 17, 84
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 284
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 101
Eco53kI GAGCTC 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 223
EcoT22I ATGCAT 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 5 cut(s) 103, 128, 345, 410, 414
FaiI YATR 5 cut(s) 101, 126, 343, 408, 412
FatI CATG 5 cut(s) 99, 124, 341, 406, 410
FokI GGATG 2 cut(s) 77, 240
FriOI GRGCYC 1 cut(s) 9
HaeIII GGCC 4 cut(s) 24, 195, 221, 286
HgaI GACGC 2 cut(s) 58, 119
Hin1II CATG 5 cut(s) 103, 128, 345, 410, 414
HinfI GANTC 1 cut(s) 255
HphI GGTGA 2 cut(s) 170, 304
Hpy188I TCNGA 1 cut(s) 140
Hpy188III TCNNGA 2 cut(s) 100, 119
HpyAV CCTTC 1 cut(s) 359
HpyCH4V TGCA 4 cut(s) 299, 392, 398, 410
HpyF3I CTNAG 2 cut(s) 17, 84
Hsp92II CATG 5 cut(s) 103, 128, 345, 410, 414
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 4
LweI GCATC 2 cut(s) 93, 330
MaeIII GTNAC 2 cut(s) 79, 158
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 1 cut(s) 369
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 286
MluCI AATT 1 cut(s) 300
MluNI TGGCCA 1 cut(s) 286
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 4 cut(s) 14, 148, 245, 283
Mox20I TGGCCA 1 cut(s) 286
Mph1103I ATGCAT 1 cut(s) 412
MroXI GAANNNNTTC 1 cut(s) 236
MscI TGGCCA 1 cut(s) 286
MseI TTAA 2 cut(s) 134, 303
MslI CAYNNNNRTG 1 cut(s) 340
Msp20I TGGCCA 1 cut(s) 286
MspR9I CCNGG 1 cut(s) 218
Mva1269I GAATGC 2 cut(s) 236, 301
MvaI CCWGG 1 cut(s) 218
NdeII GATC 1 cut(s) 115
NlaIII CATG 5 cut(s) 103, 128, 345, 410, 414
NmuCI GTSAC 2 cut(s) 79, 158
NsiI ATGCAT 1 cut(s) 412
NspI RCATGY 2 cut(s) 345, 410
PaeR7I CTCGAG 1 cut(s) 8
PagI TCATGA 1 cut(s) 99
PaqCI CACCTGC 1 cut(s) 403
PciI ACATGT 1 cut(s) 341
PctI GAATGC 2 cut(s) 236, 301
PdmI GAANNNNTTC 1 cut(s) 236
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PscI ACATGT 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspPI GGNCC 2 cut(s) 193, 220
PspXI VCTCGAGB 1 cut(s) 8
PstI CTGCAG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 2 cut(s) 14, 310
RsaNI GTAC 2 cut(s) 13, 309
RseI CAYNNNNRTG 1 cut(s) 340
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 134, 303
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 2 cut(s) 193, 220
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 9
SetI ASST 6 cut(s) 9, 18, 48, 294, 370, 397
SfaNI GCATC 2 cut(s) 93, 330
SfcI CTRYAG 1 cut(s) 396
Sfr274I CTCGAG 1 cut(s) 8
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 1 cut(s) 300
SsiI CCGC 1 cut(s) 319
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 223
TaqI TCGA 1 cut(s) 9
TasI AATT 1 cut(s) 300
Tru1I TTAA 2 cut(s) 134, 303
Tru9I TTAA 2 cut(s) 134, 303
TseFI GTSAC 2 cut(s) 79, 158
Tsp45I GTSAC 2 cut(s) 79, 158
TspDTI ATGAA 3 cut(s) 229, 262, 363
XceI RCATGY 2 cut(s) 345, 410
XhoI CTCGAG 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 236
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.