Rh6DG228000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000707
Physical Location & Seq
Forward (+)
40867259 .. 40867615
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG228000.1

Sequence Viewer

Length: 357 bp
ATGGCCTACCCCCACGGCCATGCCTGTGTGAAAACGCTGACGCCATCTGATGTGAATGATAGACTTGCATTGCCTACAGAAATGGCCGACATCATGCCTGTTGGAGAGTCAGGATGTGACATTCCAATCAGAGTCTTGGACGACTCCCATCGCGTTCATCAGTTCAATTTGTCTGTTCGAAGAAATGGATATCGGAAACCAGTTTTCCAGGCCAAAGAATGGAGAGTCTTCATCGAATACAGCGGAGCCGAAGTTGGCGACAAAATTTATTTCTGGCATCAGGTAGATGAACTTATGCAAACACAATATCGCATTTTTTTGTTCAAAAACTATCTTCCTCCCCACCCAGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.78

Weight (kDa)

6.27

Isoelectric Point (pI)

27.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 219
AccII CGCG 1 cut(s) 153
AciI CCGC 1 cut(s) 243
AcoI YGGCCR 2 cut(s) 16, 84
AcsI RAATTY 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 2 cut(s) 166, 325
AjnI CCWGG 1 cut(s) 207
AoxI GGCC 4 cut(s) 3, 16, 84, 210
ApoI RAATTY 1 cut(s) 264
AsuII TTCGAA 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 220
BccI CCATC 2 cut(s) 52, 156
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 75
BglII AGATCT 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 220
Bpu14I TTCGAA 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 200
Bse3DI GCAATG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 4 cut(s) 5, 18, 86, 212
BslI CCNNNNNNNGG 1 cut(s) 219
BsnI GGCC 4 cut(s) 5, 18, 86, 212
Bsp119I TTCGAA 1 cut(s) 178
Bsp143I GATC 1 cut(s) 349
BspACI CCGC 1 cut(s) 243
BspANI GGCC 4 cut(s) 5, 18, 86, 212
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 247
BspT104I TTCGAA 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 68
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 1 cut(s) 349
BssNI GRCGYC 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 178
BstDSI CCRYGG 1 cut(s) 13
BstF5I GGATG 1 cut(s) 119
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstSFI CTRYAG 1 cut(s) 75
BstUI CGCG 1 cut(s) 153
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuRI GGCC 4 cut(s) 5, 18, 86, 212
BtgI CCRYGG 1 cut(s) 13
BtgZI GCGATG 1 cut(s) 134
BtsCI GGATG 1 cut(s) 119
CseI GACGC 1 cut(s) 49
CviAII CATG 2 cut(s) 20, 94
CviJI RGCY 5 cut(s) 5, 18, 86, 212, 248
CviKI_1 RGCY 5 cut(s) 5, 18, 86, 212, 248
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
EaeI YGGCCR 2 cut(s) 16, 84
Eco32I GATATC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 207
EcoRV GATATC 1 cut(s) 191
FaeI CATG 2 cut(s) 23, 97
FaiI YATR 3 cut(s) 21, 95, 296
FatI CATG 2 cut(s) 19, 93
FokI GGATG 1 cut(s) 126
HaeIII GGCC 4 cut(s) 5, 18, 86, 212
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 2 cut(s) 23, 97
HinfI GANTC 4 cut(s) 107, 132, 143, 225
Hpy188I TCNGA 3 cut(s) 49, 131, 195
Hpy188III TCNNGA 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 68, 298
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 23, 97
Kzo9I GATC 1 cut(s) 349
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 8 cut(s) 37, 96, 111, 194, 213, 221, 259, 266
LweI GCATC 1 cut(s) 286
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 3 cut(s) 192, 220, 326
MflI RGATCY 1 cut(s) 349
MluCI AATT 2 cut(s) 166, 264
MlyI GAGTC 4 cut(s) 116, 137, 141, 234
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 1 cut(s) 348
MslI CAYNNNNRTG 2 cut(s) 18, 24
MspA1I CMGCKG 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
MvnI CGCG 1 cut(s) 153
NdeII GATC 1 cut(s) 349
NlaIII CATG 2 cut(s) 23, 97
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 116
NspV TTCGAA 1 cut(s) 178
PflMI CCANNNNNTGG 1 cut(s) 219
PleI GAGTC 4 cut(s) 115, 137, 140, 233
PpsI GAGTC 4 cut(s) 115, 137, 140, 233
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 247
PsuI RGATCY 1 cut(s) 349
RseI CAYNNNNRTG 2 cut(s) 18, 24
Sau3AI GATC 1 cut(s) 349
SchI GAGTC 4 cut(s) 116, 137, 141, 234
ScrFI CCNGG 1 cut(s) 209
SetI ASST 1 cut(s) 285
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 75
SfuI TTCGAA 1 cut(s) 178
SmiMI CAYNNNNRTG 2 cut(s) 18, 24
Sse9I AATT 2 cut(s) 166, 264
SsiI CCGC 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 207
TaqI TCGA 2 cut(s) 178, 234
TasI AATT 2 cut(s) 166, 264
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 146, 220, 303
Van91I CCANNNNNTGG 1 cut(s) 219
XapI RAATTY 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.