Prupe.8G118100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000707
Physical Location & Seq
Reverse (-)
14484029 .. 14484355
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G118100.1

Sequence Viewer

Length: 327 bp
ATGGAGCGTTGTGAAAAAGAGTTATCACCCTCTGATGTCAATCAAAGACTAGCAGTGACGAAGGGGATGCTTGAATTCTTGCCGCCTATAGATCCAGAGCATGATGTCCCAGTCAGAGTCTTAGACGAAATGGGTAAGGTCTATGTATTCTATTTATCTTGCAGACAAGGCAAGCACAGAAAACCAGTTTTCCAGTCAAAACAATGGAGAGTTTTTGTCAAGGAGAGAGGCATTGCTGCTGGGGATGTCATATACTTGTGGGCTGAGGAAAATGCATTTCATCAAACACAATACAGAATTGCGCTGCTGAAAATGCTCTTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.68

Weight (kDa)

8.6

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 83
AclWI GGATC 1 cut(s) 86
AcsI RAATTY 1 cut(s) 74
AgsI TTSAA 1 cut(s) 74
AlwI GGATC 1 cut(s) 86
ApeKI GCWGC 2 cut(s) 236, 304
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 1 cut(s) 304
AsuHPI GGTGA 1 cut(s) 18
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 223, 291
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BfaI CTAG 2 cut(s) 50, 325
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 3 cut(s) 83, 237, 305
BlsI GCNGC 3 cut(s) 84, 238, 306
BmrI ACTGGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 104
Bpu10I CCTNAGC 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 39
Bse1I ACTGG 3 cut(s) 110, 185, 193
Bse3DI GCAATG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 39
BseGI GGATG 2 cut(s) 72, 250
BseJI GATNNNNATC 1 cut(s) 39
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 3 cut(s) 110, 185, 193
BseXI GCAGC 2 cut(s) 223, 291
BseYI CCCAGC 1 cut(s) 239
BslFI GGGAC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 256
BspPI GGATC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 3 cut(s) 110, 185, 193
BssMI GATC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 2 cut(s) 121, 264
BstF5I GGATG 2 cut(s) 72, 250
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 168, 313
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 223, 291
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BtsCI GGATG 2 cut(s) 72, 250
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 173
CfoI GCGC 1 cut(s) 304
CviAII CATG 1 cut(s) 101
CviJI RGCY 1 cut(s) 263
CviKI_1 RGCY 1 cut(s) 263
DdeI CTNAG 2 cut(s) 121, 264
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 74
EcoT22I ATGCAT 1 cut(s) 277
FaeI CATG 1 cut(s) 104
FaiI YATR 5 cut(s) 89, 102, 144, 251, 253
FaqI GGGAC 1 cut(s) 92
FatI CATG 1 cut(s) 100
Fnu4HI GCNGC 3 cut(s) 83, 237, 305
FokI GGATG 2 cut(s) 79, 257
Fsp4HI GCNGC 3 cut(s) 83, 237, 305
FspBI CTAG 2 cut(s) 50, 325
GlaI GCGC 1 cut(s) 303
GluI GCNGC 3 cut(s) 83, 237, 305
GsaI CCCAGC 1 cut(s) 243
HhaI GCGC 1 cut(s) 304
Hin1II CATG 1 cut(s) 104
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 1 cut(s) 117
HphI GGTGA 1 cut(s) 18
Hpy188I TCNGA 2 cut(s) 34, 116
Hpy188III TCNNGA 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 162, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 313
HpyF3I CTNAG 2 cut(s) 121, 264
Hsp92II CATG 1 cut(s) 104
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 108, 123, 198, 206, 225
Lsp1109I GCAGC 2 cut(s) 223, 291
LweI GCATC 1 cut(s) 57
MaeI CTAG 2 cut(s) 50, 325
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MflI RGATCY 1 cut(s) 91
MluCI AATT 2 cut(s) 74, 297
MlyI GAGTC 1 cut(s) 126
MnlI CCTC 3 cut(s) 40, 221, 259
Mph1103I ATGCAT 1 cut(s) 277
MwoI GCNNNNNNNGC 2 cut(s) 168, 313
NdeII GATC 1 cut(s) 91
NlaIII CATG 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 55
NsiI ATGCAT 1 cut(s) 277
PkrI GCNGC 3 cut(s) 84, 238, 306
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 239
PsuI RGATCY 1 cut(s) 91
SatI GCNGC 3 cut(s) 83, 237, 305
Sau3AI GATC 1 cut(s) 91
SchI GAGTC 1 cut(s) 126
SetI ASST 1 cut(s) 141
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 1 cut(s) 87
Sse9I AATT 2 cut(s) 74, 297
SsiI CCGC 1 cut(s) 83
SspMI CTAG 2 cut(s) 50, 325
TasI AATT 2 cut(s) 74, 297
TauI GCSGC 1 cut(s) 85
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 236, 304
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 269
TspRI CASTG 1 cut(s) 60
XapI RAATTY 1 cut(s) 74
XspI CTAG 2 cut(s) 50, 325
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.