Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Forward (+)

18312217 .. 18312573

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGACTACCCCCACGGCCATGCCTGTGTGAAAACGCTGACGCCATCTGATGTGAATGGTAGGCTTGCAGTGCCTAGAGAAATGGCCCACATTATGCCTGTTGGAGAGCCAGGACGCAACATTCCAATCAGAGACTTGGACGACTCCGGTCGCGTTTATCAGTTCTATTTGTCTGTTCGAAGAAATGGATATCGGAAACCAGTTTTGCAGGCCAGAGAATGGAGAGCCTTCATCAAATACCGCGGAGCCGAAGTTGACGACAAAATTTATTTCTGGCATCAGGTAGATGAACTTATGCAAACAGAATATCGCATTTTTTTGTTCAGAAACTATCTTCCTCTCCACCCAGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

14.03

Weight (kDa)

8.76

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	219
AccII	CGCG	2 cut(s)	153, 243
AciI	CCGC	2 cut(s)	241, 243
AcoI	YGGCCR	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	126
AoxI	GGCC	3 cut(s)	16, 84, 210
ApoI	RAATTY	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	85
AsuII	TTCGAA	1 cut(s)	178
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	75
BglII	AGATCT	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	286
BoxI	GACNNNNGTC	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	13, 241
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	13, 241
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	200
Bsh1236I	CGCG	2 cut(s)	153, 243
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	3 cut(s)	18, 86, 212
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	3 cut(s)	18, 86, 212
Bsp119I	TTCGAA	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	2 cut(s)	241, 243
BspANI	GGCC	3 cut(s)	18, 86, 212
BspFNI	CGCG	2 cut(s)	153, 243
BspLI	GGNNCC	1 cut(s)	247
BspT104I	TTCGAA	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	13, 241
BssMI	GATC	1 cut(s)	349
BssNI	GRCGYC	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	111
BstACI	GRCGYC	1 cut(s)	41
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	66, 210
BstDSI	CCRYGG	2 cut(s)	13, 241
BstFNI	CGCG	2 cut(s)	153, 243
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	349
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	111
BstPAI	GACNNNNGTC	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	109
BstUI	CGCG	2 cut(s)	153, 243
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	3 cut(s)	18, 86, 212
BtgI	CCRYGG	2 cut(s)	13, 241
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	66, 210
Cfr13I	GGNCC	1 cut(s)	85
Cfr42I	CCGCGG	1 cut(s)	244
CseI	GACGC	2 cut(s)	49, 123
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	7 cut(s)	18, 64, 86, 109, 212, 227, 248
CviKI_1	RGCY	7 cut(s)	18, 64, 86, 109, 212, 227, 248
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	191
FaeI	CATG	1 cut(s)	23
FaiI	YATR	3 cut(s)	21, 95, 296
FatI	CATG	1 cut(s)	19
FspBI	CTAG	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	18, 86, 212
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	2 cut(s)	49, 123
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	4 cut(s)	49, 131, 195, 326
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	68, 208, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	23
KspI	CCGCGG	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	1 cut(s)	245
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	75
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	2 cut(s)	192, 326
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	1 cut(s)	348
MslI	CAYNNNNRTG	2 cut(s)	18, 24
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	2 cut(s)	153, 243
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	247
NspV	TTCGAA	1 cut(s)	178
PflMI	CCANNNNNTGG	1 cut(s)	219
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PshAI	GACNNNNGTC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	349
RseI	CAYNNNNRTG	2 cut(s)	18, 24
SacII	CCGCGG	1 cut(s)	244
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	1 cut(s)	285
SfaNI	GCATC	1 cut(s)	286
Sfr303I	CCGCGG	1 cut(s)	244
SfuI	TTCGAA	1 cut(s)	178
SgrBI	CCGCGG	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	18, 24
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	2 cut(s)	241, 243
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	109
TaqI	TCGA	1 cut(s)	178
TasI	AATT	1 cut(s)	264
TscAI	CASTG	1 cut(s)	75
TspDTI	ATGAA	2 cut(s)	220, 303
TspRI	CASTG	1 cut(s)	75
Van91I	CCANNNNNTGG	1 cut(s)	219
XapI	RAATTY	1 cut(s)	264
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.