Rh7DG047200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000707
Physical Location & Seq
Reverse (-)
3632332 .. 3632782
451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG047200.1

Sequence Viewer

Length: 276 bp
ATGGAGTACAAATACTTGAGAGGCCTTCCCAACTTTGTAAAACAGCTGACGGATGTGAATGACAGACTTGCAGTGACTATTAAGATGGCTCTCATGTTGCCTCGTGCAGAACCAGTACGTGACACTCAAATCAGAGTCTTGGACGATCTGGGTGACGACTGTTCTGCAGAAAAAGCCCATATCCCAAACCAGTTTTTCGGTCCAAAGAATGGAGAGCCTTCATCCGAAAACAAGGAGCCAGACCCGGCGACTCCATCTATTTCTGGCCAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.18

Weight (kDa)

5.3

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 265
AfaI GTAC 2 cut(s) 8, 117
AfiI CCNNNNNNNGG 1 cut(s) 209
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
AoxI GGCC 2 cut(s) 22, 265
AspS9I GGNCC 1 cut(s) 200
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 200
BalI TGGCCA 1 cut(s) 267
BauI CACGAG 1 cut(s) 102
BccI CCATC 2 cut(s) 79, 262
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BcnI CCSGG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse1I ACTGG 2 cut(s) 113, 190
BseGI GGATG 2 cut(s) 58, 221
BseLI CCNNNNNNNGG 1 cut(s) 209
BseNI ACTGG 2 cut(s) 113, 190
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 2 cut(s) 24, 267
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 209
BsnI GGCC 2 cut(s) 24, 267
Bsp143I GATC 1 cut(s) 145
BspANI GGCC 2 cut(s) 24, 267
BspLI GGNNCC 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 169
BsrI ACTGG 2 cut(s) 113, 190
BssMI GATC 1 cut(s) 145
BssSI CACGAG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 119
BstF5I GGATG 2 cut(s) 58, 221
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 165
BsuRI GGCC 2 cut(s) 24, 267
BtsCI GGATG 2 cut(s) 58, 221
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 7, 116
CviAII CATG 1 cut(s) 94
CviJI RGCY 7 cut(s) 24, 46, 89, 176, 217, 238, 267
CviKI_1 RGCY 7 cut(s) 24, 46, 89, 176, 217, 238, 267
CviQI GTAC 2 cut(s) 7, 116
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 265
Eco147I AGGCCT 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 200
FaeI CATG 1 cut(s) 97
FaiI YATR 2 cut(s) 95, 180
FatI CATG 1 cut(s) 93
FokI GGATG 2 cut(s) 65, 208
HaeIII GGCC 2 cut(s) 24, 267
HapII CCGG 1 cut(s) 245
Hin1II CATG 1 cut(s) 97
HinfI GANTC 2 cut(s) 135, 250
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 134, 226
HpyAV CCTTC 2 cut(s) 35, 228
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 3 cut(s) 71, 107, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 1 cut(s) 97
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 6 cut(s) 126, 134, 203, 249, 252, 258
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 3 cut(s) 73, 119, 152
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MlsI TGGCCA 1 cut(s) 267
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 2 cut(s) 144, 244
MnlI CCTC 3 cut(s) 14, 111, 264
Mox20I TGGCCA 1 cut(s) 267
MscI TGGCCA 1 cut(s) 267
MseI TTAA 1 cut(s) 81
Msp20I TGGCCA 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 173
NciI CCSGG 1 cut(s) 245
NdeII GATC 1 cut(s) 145
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 3 cut(s) 73, 119, 152
PceI AGGCCT 1 cut(s) 24
PflMI CCANNNNNTGG 1 cut(s) 209
PleI GAGTC 2 cut(s) 143, 244
PpsI GAGTC 2 cut(s) 143, 244
Ppu21I YACGTR 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 200
PstI CTGCAG 1 cut(s) 169
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 2 cut(s) 8, 117
RsaNI GTAC 2 cut(s) 7, 116
SaqAI TTAA 1 cut(s) 81
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 2 cut(s) 144, 244
ScrFI CCNGG 1 cut(s) 245
SetI ASST 3 cut(s) 48, 121, 275
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SseBI AGGCCT 1 cut(s) 24
StuI AGGCCT 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 1 cut(s) 121
TaqII GACCGA 1 cut(s) 188
TatI WGTACW 1 cut(s) 6
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 3 cut(s) 73, 119, 152
Tsp45I GTSAC 3 cut(s) 73, 119, 152
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 1 cut(s) 78
Van91I CCANNNNNTGG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.