RLG00000005120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000707
Physical Location & Seq
Reverse (-)
65149589 .. 65150310
722 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005120

Sequence Viewer

Length: 333 bp
ATGGAGTACCAGTACCAGAGCCGCTACCTTGAGAAACAGCTGACGGAAACTGATGTGAGTGGTAGGCTCGCATTGCCGAAACATATTGCGGCAATACTGCCTCCTGCACAACCAGGAGGCGTGGTTCCTATCAGAGTGCTGGACGAATTGGGCCACGTTTATCAATTCCGTTTGTATGGAAGAAGAAGAGGCCCGTCCAAACCAGTTTTCCAGTCCAGAGAATGGAGAAAATTCGTCAGATGCCGAGGAGTCAGTGATGGCGACCTGATTTACTTCTGGCTGGAGGTAAATGAAGATAAAGCTGTAAAATTTGTATTGTACTACAGTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.89

Weight (kDa)

9.48

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 12 - 101 3.8e-08 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 222
AciI CCGC 2 cut(s) 22, 89
AcsI RAATTY 2 cut(s) 230, 308
AfaI GTAC 4 cut(s) 8, 14, 320, 328
AfiI CCNNNNNNNGG 1 cut(s) 222
AjnI CCWGG 1 cut(s) 112
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AloI GAACNNNNNNTCC 2 cut(s) 108, 140
AluBI AGCT 2 cut(s) 40, 302
AluI AGCT 2 cut(s) 40, 302
AoxI GGCC 2 cut(s) 151, 190
ApoI RAATTY 2 cut(s) 230, 308
AspS9I GGNCC 2 cut(s) 151, 191
BccI CCATC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 322
BisI GCNGC 2 cut(s) 22, 90
BlsI GCNGC 2 cut(s) 23, 91
Bme1390I CCNGG 1 cut(s) 114
BmgT120I GGNCC 2 cut(s) 151, 191
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 244
BsaXI ACNNNNNCTCC 3 cut(s) 26, 108, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 3 cut(s) 10, 203, 211
Bse3DI GCAATG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMI GCAATG 1 cut(s) 71
BseNI ACTGG 3 cut(s) 10, 203, 211
BseRI GAGGAG 1 cut(s) 261
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 2 cut(s) 153, 192
BslI CCNNNNNNNGG 1 cut(s) 222
BsnI GGCC 2 cut(s) 153, 192
BspACI CCGC 2 cut(s) 22, 89
BspANI GGCC 2 cut(s) 153, 192
BspLI GGNNCC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 71
BsrI ACTGG 3 cut(s) 10, 203, 211
BssECI CCNNGG 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 326
Bst6I CTCTTC 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 322
BsuRI GGCC 2 cut(s) 153, 192
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 151, 191
Csp6I GTAC 4 cut(s) 7, 13, 319, 327
CviJI RGCY 7 cut(s) 21, 40, 67, 153, 192, 280, 302
CviKI_1 RGCY 7 cut(s) 21, 40, 67, 153, 192, 280, 302
CviQI GTAC 4 cut(s) 7, 13, 319, 327
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 112
FaiI YATR 3 cut(s) 84, 177, 331
Fnu4HI GCNGC 2 cut(s) 22, 90
Fsp4HI GCNGC 2 cut(s) 22, 90
GluI GCNGC 2 cut(s) 22, 90
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 2 cut(s) 153, 192
HinfI GANTC 1 cut(s) 249
Hpy188I TCNGA 2 cut(s) 134, 239
Hpy188III TCNNGA 1 cut(s) 216
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpySE526I ACGT 1 cut(s) 156
LweI GCATC 1 cut(s) 230
MaeII ACGT 1 cut(s) 156
MboII GAAGA 4 cut(s) 192, 195, 198, 305
MluCI AATT 4 cut(s) 146, 164, 230, 308
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 5 cut(s) 110, 111, 182, 239, 277
MspA1I CMGCKG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 126
NmeAIII GCCGAG 1 cut(s) 269
PflMI CCANNNNNTGG 1 cut(s) 222
PkrI GCNGC 2 cut(s) 23, 91
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 2 cut(s) 151, 191
PvuII CAGCTG 1 cut(s) 40
RsaI GTAC 4 cut(s) 8, 14, 320, 328
RsaNI GTAC 4 cut(s) 7, 13, 319, 327
SatI GCNGC 2 cut(s) 22, 90
Sau96I GGNCC 2 cut(s) 151, 191
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 114
SetI ASST 6 cut(s) 30, 42, 159, 267, 288, 304
SfaNI GCATC 1 cut(s) 230
SfcI CTRYAG 1 cut(s) 322
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 4 cut(s) 146, 164, 230, 308
SsiI CCGC 2 cut(s) 22, 89
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 326
TaiI ACGT 1 cut(s) 159
TasI AATT 4 cut(s) 146, 164, 230, 308
TatI WGTACW 2 cut(s) 318, 326
TauI GCSGC 2 cut(s) 24, 92
TscAI CASTG 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 306
TspGWI ACGGA 2 cut(s) 59, 158
TspRI CASTG 1 cut(s) 259
Van91I CCANNNNNTGG 1 cut(s) 222
XapI RAATTY 2 cut(s) 230, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.