Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000309.1

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Forward (+)

220736 .. 221095

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000309.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggagtaccccggccatgcggatgcccctaggaaaaggctgacaaaatctgatatggatagacttgcagtgcctacagaatggggcgcattcatgcctcctgcacagccagatcgcaacattccaatcagagtcttggacgacttgggtcacgtttatgagttctatttgtctgttcgaagaaatggatatccgaaaccagttttccaggccagagaatggaaacgattcacccaataccgaggagccaaagttgacgacgaaatttatttccggtatcaggtaaatgaacttatgcaaacacaatatcgcattgtattgctcagagactattttcgtccatcgccaccaggtctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

14.23

Weight (kDa)

9.43

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	219
AciI	CCGC	1 cut(s)	20
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	264
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	219, 280
AjnI	CCWGG	2 cut(s)	207, 349
Alw26I	GTCTC	1 cut(s)	321
AoxI	GGCC	2 cut(s)	13, 210
ApoI	RAATTY	1 cut(s)	264
Asp700I	GAANNNNTTC	1 cut(s)	227
AspA2I	CCTAGG	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	223
AsuII	TTCGAA	1 cut(s)	178
AvrII	CCTAGG	1 cut(s)	29
BccI	CCATC	1 cut(s)	349
BciT130I	CCWGG	2 cut(s)	209, 351
BcnI	CCSGG	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	75
BlnI	CCTAGG	1 cut(s)	29
Bme1390I	CCNGG	3 cut(s)	12, 209, 351
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	3 cut(s)	12, 209, 351
BmsI	GCATC	1 cut(s)	13
BoxI	GACNNNNGTC	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	12
BsaJI	CCNNGG	3 cut(s)	10, 29, 241
BsaWI	WCCGGW	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 280
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	2 cut(s)	209, 351
BseDI	CCNNGG	3 cut(s)	10, 29, 241
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	2 cut(s)	219, 280
BseMII	CTCAG	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	258
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	15, 212
BsiSI	CCGG	2 cut(s)	12, 274
BslI	CCNNNNNNNGG	2 cut(s)	219, 280
BsmAI	GTCTC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	15, 212
Bsp119I	TTCGAA	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	15, 212
BspCNI	CTCAG	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	247
BspT104I	TTCGAA	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	10, 29, 241
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	209, 351
BstBI	TTCGAA	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	112
BstNI	CCWGG	2 cut(s)	209, 351
BstPAI	GACNNNNGTC	1 cut(s)	147
BstSCI	CCNGG	3 cut(s)	10, 207, 349
BstSFI	CTRYAG	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	15, 212
BtgZI	GCGATG	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	28
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
CfoI	GCGC	1 cut(s)	89
CsiI	ACCWGGT	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	17, 94
CviJI	RGCY	5 cut(s)	15, 40, 109, 212, 248
CviKI_1	RGCY	5 cut(s)	15, 40, 109, 212, 248
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	207, 349
EcoRV	GATATC	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	2 cut(s)	20, 97
FaiI	YATR	5 cut(s)	18, 56, 95, 159, 296
FatI	CATG	2 cut(s)	16, 93
FokI	GGATG	1 cut(s)	35
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	15, 212
HapII	CCGG	2 cut(s)	12, 274
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	20, 97
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	2 cut(s)	132, 228
HpaII	CCGG	2 cut(s)	12, 274
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	4 cut(s)	52, 131, 195, 326
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	68, 104, 298
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	20, 97
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	245
LweI	GCATC	1 cut(s)	13
MabI	ACCWGGT	1 cut(s)	349
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	1 cut(s)	192
MluCI	AATT	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	141
MnlI	CCTC	2 cut(s)	108, 236
MroXI	GAANNNNTTC	1 cut(s)	227
MslI	CAYNNNNRTG	2 cut(s)	21, 156
MspI	CCGG	2 cut(s)	12, 274
MspR9I	CCNGG	3 cut(s)	12, 209, 351
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	2 cut(s)	209, 351
NciI	CCSGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	2 cut(s)	20, 97
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	149
NspV	TTCGAA	1 cut(s)	178
PctI	GAATGC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	228
PflMI	CCANNNNNTGG	1 cut(s)	219
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PshAI	GACNNNNGTC	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	207, 349
PspGI	CCWGG	2 cut(s)	207, 349
PspN4I	GGNNCC	1 cut(s)	247
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	2 cut(s)	21, 156
Sau3AI	GATC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	3 cut(s)	12, 209, 351
SetI	ASST	3 cut(s)	156, 285, 355
SexAI	ACCWGGT	1 cut(s)	349
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	21, 156
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	3 cut(s)	10, 207, 349
StyI	CCWWGG	1 cut(s)	29
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	178
TasI	AATT	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	228
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	82, 303
TspRI	CASTG	1 cut(s)	75
Van91I	CCANNNNNTGG	1 cut(s)	219
XapI	RAATTY	1 cut(s)	264
XmaJI	CCTAGG	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	227
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.