Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003511.1

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Forward (+)

54721 .. 55200

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003511.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggagctccagtacctggacggccgtccagtgtttgtgaaacatctgaagctaacagatgtggatagcagactggtactgactactgagatgcttcacatgatcatgcatcctccagatccaaaacatgacactccaatcagagtcttggctgataagggggacgtctatcagttcgacttgtctgtaagaaagggcccacatctcaaaccagttttccaggccaaagaatggcaagcattcatcagaaaacgaagagccaaagaaaaggacaccatctatttctggcaagaggtgaatgcaattaatcatacagattaccgcatcatgttactaacatgttatctttcccccaagccagaaggtctttcatctctcgagccatctgcacctgcagatgaacatgaaaagctagctatgaaggcttgggcggctcacggcggtctagcactaagcactgtagcgaatgatcacaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

18.27

Weight (kDa)

7.14

Isoelectric Point (pI)

27.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	400
AatII	GACGTC	1 cut(s)	168
Acc36I	ACCTGC	1 cut(s)	400
AccB7I	CCANNNNNTGG	2 cut(s)	16, 231
AciI	CCGC	3 cut(s)	322, 431, 441
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	2 cut(s)	14, 78
AfiI	CCNNNNNNNGG	2 cut(s)	16, 231
AflIII	ACRYGT	1 cut(s)	338
AjnI	CCWGG	2 cut(s)	15, 219
AluBI	AGCT	4 cut(s)	7, 52, 412, 416
AluI	AGCT	4 cut(s)	7, 52, 412, 416
Alw21I	GWGCWC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	113
AlwNI	CAGNNNCTG	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	3 cut(s)	22, 196, 222
ApaI	GGGCCC	1 cut(s)	200
AseI	ATTAAT	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	196, 197
AsuHPI	GGTGA	1 cut(s)	307
AsuNHI	GCTAGC	1 cut(s)	412
AvaI	CYCGRG	1 cut(s)	377
BaeGI	GKGCMC	1 cut(s)	200
BanII	GRGCYC	2 cut(s)	9, 200
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	2 cut(s)	284, 391
BceAI	ACGGC	3 cut(s)	9, 37, 454
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	2 cut(s)	17, 221
BclI	TGATCA	2 cut(s)	102, 469
BfaI	CTAG	2 cut(s)	413, 446
BfmI	CTRYAG	2 cut(s)	393, 459
BfuAI	ACCTGC	1 cut(s)	400
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme1390I	CCNGG	2 cut(s)	17, 221
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	2 cut(s)	196, 197
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	2 cut(s)	17, 221
BmsI	GCATC	3 cut(s)	81, 118, 333
BmtI	GCTAGC	1 cut(s)	416
BoxI	GACNNNNGTC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	165
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 231
Bse1I	ACTGG	4 cut(s)	10, 29, 78, 212
BseBI	CCWGG	2 cut(s)	17, 221
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	2 cut(s)	16, 231
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	4 cut(s)	10, 29, 78, 212
BseSI	GKGCMC	1 cut(s)	200
BseX3I	CGGCCG	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	372
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	24, 198, 224
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	16, 231
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	2 cut(s)	239, 304
BsnI	GGCC	3 cut(s)	24, 198, 224
BsoBI	CYCGRG	1 cut(s)	377
Bsp120I	GGGCCC	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	9, 200
Bsp143I	GATC	3 cut(s)	102, 118, 469
BspACI	CCGC	3 cut(s)	322, 431, 441
BspANI	GGCC	3 cut(s)	24, 198, 224
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	400
BspOI	GCTAGC	1 cut(s)	416
BspPI	GGATC	1 cut(s)	113
BspQI	GCTCTTC	1 cut(s)	250
BsrI	ACTGG	4 cut(s)	10, 29, 78, 212
BssMI	GATC	3 cut(s)	102, 118, 469
BssNI	GRCGYC	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	17, 221
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	1 cut(s)	250
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	237, 414
BstDEI	CTNAG	2 cut(s)	87, 452
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	3 cut(s)	105, 121, 472
BstMBI	GATC	3 cut(s)	102, 118, 469
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 431
BstNI	CCWGG	2 cut(s)	17, 221
BstNSI	RCATGY	1 cut(s)	342
BstPAI	GACNNNNGTC	1 cut(s)	24
BstSCI	CCNGG	2 cut(s)	15, 219
BstSFI	CTRYAG	2 cut(s)	393, 459
BstSLI	GKGCMC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BstZI	CGGCCG	1 cut(s)	22
BsuRI	GGCC	3 cut(s)	24, 198, 224
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	36, 456
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	2 cut(s)	237, 414
CaiI	CAGNNNCTG	1 cut(s)	16
Cfr13I	GGNCC	2 cut(s)	196, 197
Csp6I	GTAC	2 cut(s)	13, 77
CviAII	CATG	6 cut(s)	100, 106, 128, 328, 339, 404
CviQI	GTAC	2 cut(s)	13, 77
DdeI	CTNAG	2 cut(s)	87, 452
DpnI	GATC	3 cut(s)	104, 120, 471
DpnII	GATC	3 cut(s)	102, 118, 469
EaeI	YGGCCR	1 cut(s)	22
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	7
EclXI	CGGCCG	1 cut(s)	22
Eco24I	GRGCYC	2 cut(s)	9, 200
Eco52I	CGGCCG	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRII	CCWGG	2 cut(s)	15, 219
EcoT22I	ATGCAT	1 cut(s)	111
EcoT38I	GRGCYC	2 cut(s)	9, 200
FaeI	CATG	6 cut(s)	103, 109, 131, 331, 342, 407
FaiI	YATR	8 cut(s)	101, 107, 129, 312, 329, 340, 405, 419
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	6 cut(s)	99, 105, 127, 327, 338, 403
FbaI	TGATCA	2 cut(s)	102, 469
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	1 cut(s)	96
FriOI	GRGCYC	2 cut(s)	9, 200
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	2 cut(s)	413, 446
GluI	GCNGC	1 cut(s)	432
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	24, 198, 224
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	6 cut(s)	103, 109, 131, 331, 342, 407
HinfI	GANTC	1 cut(s)	144
HphI	GGTGA	1 cut(s)	307
Hpy188I	TCNGA	3 cut(s)	48, 143, 248
Hpy188III	TCNNGA	2 cut(s)	116, 377
HpyAV	CCTTC	2 cut(s)	356, 415
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	4 cut(s)	109, 302, 389, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 431
HpyF3I	CTNAG	2 cut(s)	87, 452
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	6 cut(s)	103, 109, 131, 331, 342, 407
Ksp22I	TGATCA	2 cut(s)	102, 469
Kzo9I	GATC	3 cut(s)	102, 118, 469
LguI	GCTCTTC	1 cut(s)	250
LmnI	GCTCC	2 cut(s)	4, 12
LweI	GCATC	3 cut(s)	81, 118, 333
MaeI	CTAG	2 cut(s)	413, 446
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	330
MalI	GATC	3 cut(s)	104, 120, 471
MboI	GATC	3 cut(s)	102, 118, 469
MboII	GAAGA	1 cut(s)	267
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	2 cut(s)	9, 200
MluCI	AATT	2 cut(s)	303, 475
MlyI	GAGTC	1 cut(s)	153
MnlI	CCTC	2 cut(s)	123, 286
Mph1103I	ATGCAT	1 cut(s)	111
MseI	TTAA	2 cut(s)	306, 478
MslI	CAYNNNNRTG	1 cut(s)	104
MspR9I	CCNGG	2 cut(s)	17, 221
Mva1269I	GAATGC	2 cut(s)	239, 304
MvaI	CCWGG	2 cut(s)	17, 221
MwoI	GCNNNNNNNGC	2 cut(s)	422, 431
NdeII	GATC	3 cut(s)	102, 118, 469
NheI	GCTAGC	1 cut(s)	412
NlaIII	CATG	6 cut(s)	103, 109, 131, 331, 342, 407
NlaIV	GGNNCC	1 cut(s)	198
NsiI	ATGCAT	1 cut(s)	111
NspI	RCATGY	1 cut(s)	342
PaeR7I	CTCGAG	1 cut(s)	377
PaqCI	CACCTGC	1 cut(s)	400
PciI	ACATGT	1 cut(s)	338
PciSI	GCTCTTC	1 cut(s)	250
PctI	GAATGC	2 cut(s)	239, 304
PflMI	CCANNNNNTGG	2 cut(s)	16, 231
PkrI	GCNGC	1 cut(s)	433
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PscI	ACATGT	1 cut(s)	338
PshAI	GACNNNNGTC	1 cut(s)	24
PshBI	ATTAAT	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	15, 219
PspGI	CCWGG	2 cut(s)	15, 219
PspN4I	GGNNCC	1 cut(s)	198
PspOMI	GGGCCC	1 cut(s)	196
PspPI	GGNCC	2 cut(s)	196, 197
PstI	CTGCAG	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	2 cut(s)	14, 78
RsaNI	GTAC	2 cut(s)	13, 77
RseI	CAYNNNNRTG	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	306, 478
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	3 cut(s)	102, 118, 469
Sau96I	GGNCC	2 cut(s)	196, 197
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	17, 221
SduI	GDGCHC	2 cut(s)	9, 200
SetI	ASST	9 cut(s)	9, 18, 54, 168, 297, 367, 394, 414, 418
SfaNI	GCATC	3 cut(s)	81, 118, 333
SfcI	CTRYAG	2 cut(s)	393, 459
Sfr274I	CTCGAG	1 cut(s)	377
SlaI	CTCGAG	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	2 cut(s)	303, 475
SsiI	CCGC	3 cut(s)	322, 431, 441
SspMI	CTAG	2 cut(s)	413, 446
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	15, 219
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	2 cut(s)	177, 378
TasI	AATT	2 cut(s)	303, 475
TauI	GCSGC	1 cut(s)	434
Tru1I	TTAA	2 cut(s)	306, 478
Tru9I	TTAA	2 cut(s)	306, 478
TscAI	CASTG	2 cut(s)	36, 463
TspDTI	ATGAA	5 cut(s)	232, 360, 414, 420, 434
TspRI	CASTG	2 cut(s)	36, 463
Van91I	CCANNNNNTGG	2 cut(s)	16, 231
VspI	ATTAAT	1 cut(s)	306
XceI	RCATGY	1 cut(s)	342
XhoI	CTCGAG	1 cut(s)	377
XspI	CTAG	2 cut(s)	413, 446
ZraI	GACGTC	1 cut(s)	166
Zsp2I	ATGCAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.