Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Reverse (-)

65960550 .. 65961386

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG452400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTACGTGGGTAGCAGACTCGTAGTGACTAATGAGATGCTTCACATGCTGCCTCGAGCAGATCCAGAACACGACACTCCAATCAGAGTGTTGGACGATAAGGGCGACGAGTATCAGTTCTACTTGTCTATAAGAAAGGGCCCAAATCCCAAACCAGTTTTCCAGGCCAAAGGATGGAAAGCATTCATCAAAAAACGAGGAGCCAAACTTGACGACTACATCTGTTTCTGGCCAGAGGTGAATGCAATTAAGCGTACAGATTACCGCATCAAGTTAGTTCCATTCACACTTTATCTTTCCCCCAACCCAGAAGGTCTTTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

12.54

Weight (kDa)

9.24

Isoelectric Point (pI)

23.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	174
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	230
AfaI	GTAC	2 cut(s)	5, 256
AfiI	CCNNNNNNNGG	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	162
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AlwI	GGATC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	54
AoxI	GGCC	3 cut(s)	139, 165, 230
ApaI	GGGCCC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	139, 140
AsuHPI	GGTGA	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	164
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	139, 140
BmiI	GGNNCC	2 cut(s)	141, 202
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	2 cut(s)	27, 276
BsaAI	YACGTR	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	36
BshFI	GGCC	3 cut(s)	141, 167, 232
BsiHKCI	CYCGRG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmI	GAATGC	2 cut(s)	182, 247
BsnI	GGCC	3 cut(s)	141, 167, 232
BsoBI	CYCGRG	1 cut(s)	54
Bsp120I	GGGCCC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	3 cut(s)	141, 167, 232
BspLI	GGNNCC	2 cut(s)	141, 202
BspPI	GGATC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	155
BssMI	GATC	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	179
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	164
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	141, 167, 232
BtsCI	GGATG	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	139, 140
Csp6I	GTAC	2 cut(s)	4, 255
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	4 cut(s)	141, 167, 203, 232
CviKI_1	RGCY	4 cut(s)	141, 167, 203, 232
CviQI	GTAC	2 cut(s)	4, 255
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	143
Eco88I	CYCGRG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	143
FaeI	CATG	1 cut(s)	49
FaiI	YATR	2 cut(s)	47, 131
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	1 cut(s)	186
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	50
HaeIII	GGCC	3 cut(s)	141, 167, 232
Hin1II	CATG	1 cut(s)	49
HinfI	GANTC	1 cut(s)	18
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	65
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	7 cut(s)	78, 149, 168, 176, 214, 246, 321
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	2 cut(s)	27, 276
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	143
MlsI	TGGCCA	1 cut(s)	232
MluCI	AATT	1 cut(s)	246
MluNI	TGGCCA	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	12
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	3 cut(s)	63, 191, 229
Mox20I	TGGCCA	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	232
MseI	TTAA	2 cut(s)	249, 325
Msp20I	TGGCCA	1 cut(s)	232
MspR9I	CCNGG	1 cut(s)	164
Mva1269I	GAATGC	2 cut(s)	182, 247
MvaI	CCWGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	46
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	2 cut(s)	141, 202
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	1 cut(s)	49
PaeR7I	CTCGAG	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	2 cut(s)	182, 247
PdmI	GAANNNNTTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	51
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	2 cut(s)	141, 202
PspOMI	GGGCCC	1 cut(s)	139
PspPI	GGNCC	2 cut(s)	139, 140
PspXI	VCTCGAGB	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	2 cut(s)	5, 256
RsaNI	GTAC	2 cut(s)	4, 255
SaqAI	TTAA	2 cut(s)	249, 325
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	2 cut(s)	139, 140
SchI	GAGTC	1 cut(s)	12
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	3 cut(s)	9, 240, 316
SfaNI	GCATC	2 cut(s)	27, 276
Sfr274I	CTCGAG	1 cut(s)	54
SlaI	CTCGAG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	1 cut(s)	265
StyD4I	CCNGG	1 cut(s)	162
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	55
TasI	AATT	1 cut(s)	246
Tru1I	TTAA	2 cut(s)	249, 325
Tru9I	TTAA	2 cut(s)	249, 325
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	175, 309
Van91I	CCANNNNNTGG	1 cut(s)	174
XceI	RCATGY	1 cut(s)	49
XhoI	CTCGAG	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.