Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Reverse (-)

3622411 .. 3622764

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG047100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGAGTACGAGTACCTGAGTGGCCGTCCCAACTTTGTGAAGCAGCTGACCGAAACAGATGTGGATGACAGACTTTCAGTGACTAGTGAGATGGCTCAGAAGATGCCTCCTACAAAACCAGGACGTGGCATTCCAATCAGAGTCTTGGACGATCAGGGTGACGTTTATCAATTCTGCTTGACTGGAAGAAGCGGCAACTATCCGAAACCAACTTTCCAGCGCAAAGCCTGGGGAGCTTTCATCAAAAAGCGAGGAGCCAAAGAAGGCGACTCCCTCTATTTCTGGAAAGAGGTGAATGAAAGTAAGAATACGGAATACCGCATCGAAGTGATCTCATTCATAAATGTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

13.5

Weight (kDa)

8.66

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	125
AciI	CCGC	2 cut(s)	192, 319
AcoI	YGGCCR	1 cut(s)	22
AfaI	GTAC	2 cut(s)	8, 14
AfiI	CCNNNNNNNGG	1 cut(s)	125
AhlI	ACTAGT	1 cut(s)	83
AjiI	CACGTC	1 cut(s)	125
AjnI	CCWGG	2 cut(s)	118, 227
AluBI	AGCT	2 cut(s)	46, 236
AluI	AGCT	2 cut(s)	46, 236
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	222
AsuHPI	GGTGA	2 cut(s)	170, 304
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	9
BciT130I	CCWGG	2 cut(s)	120, 229
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	2 cut(s)	44, 193
BlsI	GCNGC	2 cut(s)	45, 194
Bme1390I	CCNGG	2 cut(s)	120, 229
BmgBI	CACGTC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	2 cut(s)	120, 229
BmsI	GCATC	2 cut(s)	93, 330
BsaJI	CCNNGG	1 cut(s)	228
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	120, 229
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	2 cut(s)	8, 110
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	151, 330
BspACI	CCGC	2 cut(s)	192, 319
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	2 cut(s)	9, 109
BspLI	GGNNCC	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	2 cut(s)	151, 330
Bst2UI	CCWGG	2 cut(s)	120, 229
BstDEI	CTNAG	2 cut(s)	17, 96
BstF5I	GGATG	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	2 cut(s)	154, 333
BstMBI	GATC	2 cut(s)	151, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	2 cut(s)	120, 229
BstSCI	CCNGG	2 cut(s)	118, 227
BstV1I	GCAGC	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	84
CfoI	GCGC	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	7, 13
CviJI	RGCY	6 cut(s)	24, 46, 95, 227, 236, 257
CviKI_1	RGCY	6 cut(s)	24, 46, 95, 227, 236, 257
CviQI	GTAC	2 cut(s)	7, 13
DdeI	CTNAG	2 cut(s)	17, 96
DpnI	GATC	2 cut(s)	153, 332
DpnII	GATC	2 cut(s)	151, 330
EaeI	YGGCCR	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	118, 227
FaiI	YATR	1 cut(s)	341
FaqI	GGGAC	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	44, 193
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	44, 193
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	2 cut(s)	44, 193
HaeIII	GGCC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	222
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	141, 269
HphI	GGTGA	2 cut(s)	170, 304
Hpy188I	TCNGA	3 cut(s)	99, 140, 204
Hpy188III	TCNNGA	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	257
HpyCH4IV	ACGT	2 cut(s)	124, 162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	2 cut(s)	17, 96
HpySE526I	ACGT	2 cut(s)	124, 162
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	151, 330
LmnI	GCTCC	2 cut(s)	233, 254
LpnPI	CCDG	9 cut(s)	29, 105, 132, 140, 168, 214, 230, 241, 268
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	2 cut(s)	93, 330
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	2 cut(s)	124, 162
MaeIII	GTNAC	2 cut(s)	79, 158
MalI	GATC	2 cut(s)	153, 332
MboI	GATC	2 cut(s)	151, 330
MboII	GAAGA	2 cut(s)	112, 198
MluCI	AATT	1 cut(s)	170
MlyI	GAGTC	2 cut(s)	150, 263
MnlI	CCTC	4 cut(s)	117, 245, 283, 284
MseI	TTAA	1 cut(s)	352
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	46
MspR9I	CCNGG	2 cut(s)	120, 229
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	2 cut(s)	120, 229
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	2 cut(s)	151, 330
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	2 cut(s)	79, 158
PctI	GAATGC	1 cut(s)	129
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	45, 194
PleI	GAGTC	2 cut(s)	149, 263
PpsI	GAGTC	2 cut(s)	149, 263
Psp6I	CCWGG	2 cut(s)	118, 227
PspGI	CCWGG	2 cut(s)	118, 227
PspN4I	GGNNCC	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	2 cut(s)	8, 14
RsaNI	GTAC	2 cut(s)	7, 13
RseI	CAYNNNNRTG	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	352
SatI	GCNGC	2 cut(s)	44, 193
Sau3AI	GATC	2 cut(s)	151, 330
SchI	GAGTC	2 cut(s)	150, 263
ScrFI	CCNGG	2 cut(s)	120, 229
SetI	ASST	6 cut(s)	18, 48, 127, 165, 238, 294
SfaNI	GCATC	2 cut(s)	93, 330
SmiMI	CAYNNNNRTG	1 cut(s)	326
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	2 cut(s)	192, 319
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	118, 227
TaiI	ACGT	2 cut(s)	127, 165
TaqI	TCGA	1 cut(s)	324
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	170
TauI	GCSGC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	352
Tru9I	TTAA	1 cut(s)	352
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	2 cut(s)	79, 158
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	2 cut(s)	79, 158
TspDTI	ATGAA	3 cut(s)	229, 312, 328
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	84
Van91I	CCANNNNNTGG	1 cut(s)	125
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.