Rmu_sc0002080.1_g000054

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002080.1
OG0000707
Physical Location & Seq
Reverse (-)
230881 .. 231240
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002080.1_g000054.1.cds

Sequence Viewer

Length: 360 bp
atggccaacccccacggccatgcctgtgtgaaaacgctgacgccatctgatgtgaatgatagacttgcattgcctacagaaatggccgacatcatgcctgttggagagccaggaaacaacattccaatcagagtcttggacgactcccgtcgcgttcatcagttctatttgtctgttcgaagaagtggatatcggaaaccagttttccaggccaaagaatggagagtcttcattgaatacagcggagccgaagttggcgacaaaatttatttctggcatcaggtagatgaacttatgcaaacacaatatcgcatttttttgttcaaaaactatctgcttcctccccacccagatctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.9

Weight (kDa)

6.96

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 219
AccII CGCG 1 cut(s) 153
AciI CCGC 1 cut(s) 243
AcoI YGGCCR 3 cut(s) 3, 16, 84
AcsI RAATTY 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 2 cut(s) 236, 325
AjnI CCWGG 2 cut(s) 109, 207
AoxI GGCC 4 cut(s) 3, 16, 84, 210
ApoI RAATTY 1 cut(s) 264
AsuII TTCGAA 1 cut(s) 178
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 220
BccI CCATC 1 cut(s) 52
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 2 cut(s) 111, 209
BfmI CTRYAG 1 cut(s) 75
BglII AGATCT 1 cut(s) 352
Bme1390I CCNGG 2 cut(s) 111, 209
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 2 cut(s) 111, 209
BmsI GCATC 1 cut(s) 286
BoxI GACNNNNGTC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 220
Bpu14I TTCGAA 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 200
Bse3DI GCAATG 1 cut(s) 68
BseBI CCWGG 2 cut(s) 111, 209
BseDI CCNNGG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 4 cut(s) 5, 18, 86, 212
BslI CCNNNNNNNGG 1 cut(s) 219
BsnI GGCC 4 cut(s) 5, 18, 86, 212
Bsp119I TTCGAA 1 cut(s) 178
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 1 cut(s) 243
BspANI GGCC 4 cut(s) 5, 18, 86, 212
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 247
BspT104I TTCGAA 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 68
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 1 cut(s) 352
BssNI GRCGYC 1 cut(s) 41
Bst2UI CCWGG 2 cut(s) 111, 209
BstACI GRCGYC 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 178
BstDSI CCRYGG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 1 cut(s) 355
BstMBI GATC 1 cut(s) 352
BstNI CCWGG 2 cut(s) 111, 209
BstPAI GACNNNNGTC 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 109, 207
BstSFI CTRYAG 1 cut(s) 75
BstUI CGCG 1 cut(s) 153
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 4 cut(s) 5, 18, 86, 212
BtgI CCRYGG 1 cut(s) 13
CseI GACGC 1 cut(s) 49
CviAII CATG 2 cut(s) 20, 94
CviJI RGCY 6 cut(s) 5, 18, 86, 109, 212, 248
CviKI_1 RGCY 6 cut(s) 5, 18, 86, 109, 212, 248
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
EaeI YGGCCR 3 cut(s) 3, 16, 84
Eco32I GATATC 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 109, 207
EcoRV GATATC 1 cut(s) 191
FaeI CATG 2 cut(s) 23, 97
FaiI YATR 3 cut(s) 21, 95, 296
FatI CATG 2 cut(s) 19, 93
HaeIII GGCC 4 cut(s) 5, 18, 86, 212
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 2 cut(s) 23, 97
HinfI GANTC 3 cut(s) 132, 143, 225
Hpy188I TCNGA 3 cut(s) 49, 131, 195
Hpy99I CGWCG 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 68, 298
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 23, 97
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 9 cut(s) 37, 96, 111, 123, 194, 213, 221, 259, 266
LweI GCATC 1 cut(s) 286
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 2 cut(s) 192, 220
MflI RGATCY 1 cut(s) 352
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 264
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 137, 141, 234
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 1 cut(s) 351
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 2 cut(s) 18, 24
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 243
MspR9I CCNGG 2 cut(s) 111, 209
MvaI CCWGG 2 cut(s) 111, 209
MvnI CGCG 1 cut(s) 153
NdeII GATC 1 cut(s) 352
NlaIII CATG 2 cut(s) 23, 97
NlaIV GGNNCC 1 cut(s) 247
NspV TTCGAA 1 cut(s) 178
PflMI CCANNNNNTGG 1 cut(s) 219
PleI GAGTC 3 cut(s) 137, 140, 233
PpsI GAGTC 3 cut(s) 137, 140, 233
PshAI GACNNNNGTC 1 cut(s) 147
Psp6I CCWGG 2 cut(s) 109, 207
PspGI CCWGG 2 cut(s) 109, 207
PspN4I GGNNCC 1 cut(s) 247
PsuI RGATCY 1 cut(s) 352
RseI CAYNNNNRTG 2 cut(s) 18, 24
Sau3AI GATC 1 cut(s) 352
SchI GAGTC 3 cut(s) 137, 141, 234
ScrFI CCNGG 2 cut(s) 111, 209
SetI ASST 1 cut(s) 285
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 75
SfuI TTCGAA 1 cut(s) 178
SmiMI CAYNNNNRTG 2 cut(s) 18, 24
Sse9I AATT 1 cut(s) 264
SsiI CCGC 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 109, 207
TaqI TCGA 1 cut(s) 178
TasI AATT 1 cut(s) 264
TspDTI ATGAA 3 cut(s) 146, 220, 303
Van91I CCANNNNNTGG 1 cut(s) 219
XapI RAATTY 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.