Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Forward (+)

46784719 .. 46785075

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G574300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCACACCTTGAGCTTGAAAAATACCTGACTGAGACAGATATAGAGGGAAGGCTGGCGGTTCCTTCTGAATGGCTCAAGATATTGCCTCCATTCGAAAAGGGAAGCTTTGAAGTTCAGTTTGAGGTCACAGATGGGGTAGGGTTTTATTGGCAATTCTGCTGCTCCATTCGCAAGGAACGTTACCCAAAGCCTGTTCTTCAATCCGCGGGTTGGCTCAAGTTTGTCAATGCCAAAGACCTCCAAGCTGGGGACAAGGTTGTTCTCGACACCAGGGCTGATGATTTCAGAGGAACCAAGATCAGAATCCGAGCACAAAAGGACCTCGACAGAAATGGCCACTGGGTTGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

119

Amino Acids

13.7

Weight (kDa)

6.12

Isoelectric Point (pI)

26.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	209
AciI	CCGC	3 cut(s)	59, 207, 209
AclI	AACGTT	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	337
AfiI	CCNNNNNNNGG	2 cut(s)	213, 250
AgsI	TTSAA	3 cut(s)	20, 113, 203
AjnI	CCWGG	1 cut(s)	272
AluBI	AGCT	3 cut(s)	16, 108, 248
AluI	AGCT	3 cut(s)	16, 108, 248
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	29
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	322
AsuII	TTCGAA	1 cut(s)	96
AvaII	GGWCC	1 cut(s)	322
BalI	TGGCCA	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	29
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	274
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	2 cut(s)	63, 295
BmrFI	CCNGG	1 cut(s)	274
BmrI	ACTGGG	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	352
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	3 cut(s)	32, 62, 203
BsaBI	GATNNNNATC	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	207, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 250
Bse1I	ACTGG	1 cut(s)	347
Bse8I	GATNNNNATC	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	207, 273
BseJI	GATNNNNATC	1 cut(s)	305
BseLI	CCNNNNNNNGG	2 cut(s)	213, 250
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	149
BseYI	CCCAGC	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	316
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	213, 250
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	339
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	1 cut(s)	300
BspACI	CCGC	3 cut(s)	59, 207, 209
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	63, 295
BspT104I	TTCGAA	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	207, 273
BssMI	GATC	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	274
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	209
BstKTI	GATC	1 cut(s)	303
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	272
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	322
Cfr42I	CCGCGG	1 cut(s)	210
CviJI	RGCY	9 cut(s)	16, 55, 76, 108, 193, 217, 248, 278, 339
CviKI_1	RGCY	9 cut(s)	16, 55, 76, 108, 193, 217, 248, 278, 339
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	272
FaiI	YATR	1 cut(s)	44
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	1 cut(s)	266
FauI	CCCGC	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	163
GluI	GCNGC	1 cut(s)	163
GsaI	CCCAGC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	339
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	1 cut(s)	306
Hpy188I	TCNGA	4 cut(s)	70, 290, 305, 311
Hpy188III	TCNNGA	2 cut(s)	79, 266
HpyAV	CCTTC	2 cut(s)	45, 75
HpyCH4IV	ACGT	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	181
KspI	CCGCGG	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	300
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	7 cut(s)	41, 41, 207, 234, 259, 286, 328
Lsp1109I	GCAGC	1 cut(s)	149
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	2 cut(s)	127, 182
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MboII	GAAGA	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	316
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	339
MnlI	CCTC	6 cut(s)	40, 99, 118, 251, 284, 335
Mox20I	TGGCCA	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	274
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	171
NdeII	GATC	1 cut(s)	300
NlaIV	GGNNCC	2 cut(s)	63, 295
NmuCI	GTSAC	1 cut(s)	127
NspV	TTCGAA	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	306
PkrI	GCNGC	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	322
Psp1406I	AACGTT	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	2 cut(s)	63, 295
PspPI	GGNCC	1 cut(s)	322
PspPPI	RGGWCCY	1 cut(s)	322
SacII	CCGCGG	1 cut(s)	210
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	1 cut(s)	300
Sau96I	GGNCC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	316
Sfr303I	CCGCGG	1 cut(s)	210
SfuI	TTCGAA	1 cut(s)	96
SgrBI	CCGCGG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	322
SmlI	CTYRAG	3 cut(s)	11, 77, 218
SmoI	CTYRAG	3 cut(s)	11, 77, 218
Sse9I	AATT	1 cut(s)	155
SsiI	CCGC	3 cut(s)	59, 207, 209
StyD4I	CCNGG	1 cut(s)	272
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	3 cut(s)	96, 267, 327
TasI	AATT	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	306
TscAI	CASTG	1 cut(s)	347
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	162
Tsp45I	GTSAC	1 cut(s)	127
TspRI	CASTG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.