Rh7AG048100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000707
Physical Location & Seq
Reverse (-)
3285734 .. 3286183
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG048100.1

Sequence Viewer

Length: 399 bp
ATGGAGTACAAATACTTGAGAGGCCTTCCCAACTTTGTAAAACAGCTGACGGAATCAGATGTGAATGACAGACTTGCAGTGACTATTAAGATGGCTCTCATGTTGCCTCGTCCAGAACCAGTACGTGACACTCAAATCAGAGTCTTGGACGATCTGGGTGACGACTGTTCTGCAGAAAAAGCCCATATCGCAAACCAGTTTTTCGGTCCAAAGAATGGAGAGCCTTCATCGGAAAACGAGGAGCCAGACCCAGGCGACTCCATCTATTTCTGGCCGGTGAATGAAATTAAGCGTACAAAATACTGCATGGAGGTGATCCATTCAGATATGGTGTTTCTCCACACCCATGTCTTGGATCTTCCAACCCGCCATCTGATGAATCCCCAGAAGAAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.25

Weight (kDa)

5.49

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 215, 352
AciI CCGC 1 cut(s) 367
AclWI GGATC 2 cut(s) 310, 363
AcoI YGGCCR 1 cut(s) 272
AfaI GTAC 3 cut(s) 8, 123, 295
AfiI CCNNNNNNNGG 3 cut(s) 215, 251, 352
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
AlwI GGATC 2 cut(s) 310, 363
AoxI GGCC 2 cut(s) 22, 272
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 3 cut(s) 170, 289, 325
AvaII GGWCC 1 cut(s) 206
BccI CCATC 3 cut(s) 85, 269, 378
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciT130I CCWGG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 37
BsaAI YACGTR 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 251, 352
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 2 cut(s) 119, 196
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 250
BseLI CCNNNNNNNGG 3 cut(s) 215, 251, 352
BseNI ACTGG 2 cut(s) 119, 196
BseRI GAGGAG 1 cut(s) 254
BshFI GGCC 2 cut(s) 24, 274
BsiSI CCGG 1 cut(s) 275
BslI CCNNNNNNNGG 3 cut(s) 215, 251, 352
BsnI GGCC 2 cut(s) 24, 274
Bsp143I GATC 3 cut(s) 151, 315, 355
BspACI CCGC 1 cut(s) 367
BspANI GGCC 2 cut(s) 24, 274
BspLI GGNNCC 1 cut(s) 243
BspMAI CTGCAG 1 cut(s) 175
BspPI GGATC 2 cut(s) 310, 363
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 2 cut(s) 119, 196
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 3 cut(s) 151, 315, 355
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 167
BstBAI YACGTR 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 396
BstKTI GATC 3 cut(s) 154, 318, 358
BstMBI GATC 3 cut(s) 151, 315, 355
BstMWI GCNNNNNNNGC 2 cut(s) 179, 188
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 2 cut(s) 24, 274
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 3 cut(s) 7, 122, 294
CviAII CATG 3 cut(s) 100, 307, 347
CviJI RGCY 7 cut(s) 24, 46, 95, 182, 223, 244, 274
CviKI_1 RGCY 7 cut(s) 24, 46, 95, 182, 223, 244, 274
CviQI GTAC 3 cut(s) 7, 122, 294
DdeI CTNAG 1 cut(s) 396
DpnI GATC 3 cut(s) 153, 317, 357
DpnII GATC 3 cut(s) 151, 315, 355
EaeI YGGCCR 1 cut(s) 272
Eco147I AGGCCT 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 103, 310, 350
FaiI YATR 5 cut(s) 101, 186, 308, 329, 348
FatI CATG 3 cut(s) 99, 306, 346
FauI CCCGC 1 cut(s) 374
HaeIII GGCC 2 cut(s) 24, 274
HapII CCGG 1 cut(s) 275
Hin1II CATG 3 cut(s) 103, 310, 350
HinfI GANTC 4 cut(s) 53, 141, 257, 379
HpaII CCGG 1 cut(s) 275
HphI GGTGA 3 cut(s) 170, 289, 325
Hpy188I TCNGA 5 cut(s) 58, 140, 232, 325, 375
Hpy188III TCNNGA 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 35, 234
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 77, 173, 306
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 188
HpyF3I CTNAG 1 cut(s) 396
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 3 cut(s) 103, 310, 350
Kzo9I GATC 3 cut(s) 151, 315, 355
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 9 cut(s) 126, 132, 140, 209, 237, 256, 258, 264, 288
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 3 cut(s) 79, 125, 158
MalI GATC 3 cut(s) 153, 317, 357
MboI GATC 3 cut(s) 151, 315, 355
MboII GAAGA 1 cut(s) 350
MflI RGATCY 1 cut(s) 355
MluCI AATT 1 cut(s) 285
MlyI GAGTC 2 cut(s) 150, 251
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 4 cut(s) 14, 117, 232, 304
MseI TTAA 2 cut(s) 87, 288
MslI CAYNNNNRTG 2 cut(s) 311, 345
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 179, 188
NdeII GATC 3 cut(s) 151, 315, 355
NlaIII CATG 3 cut(s) 103, 310, 350
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 3 cut(s) 79, 125, 158
PceI AGGCCT 1 cut(s) 24
PfeI GAWTC 2 cut(s) 53, 379
PflMI CCANNNNNTGG 2 cut(s) 215, 352
PleI GAGTC 2 cut(s) 149, 251
PpsI GAGTC 2 cut(s) 149, 251
Ppu21I YACGTR 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 1 cut(s) 206
PstI CTGCAG 1 cut(s) 175
PsuI RGATCY 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 3 cut(s) 8, 123, 295
RsaNI GTAC 3 cut(s) 7, 122, 294
RseI CAYNNNNRTG 2 cut(s) 311, 345
SaqAI TTAA 2 cut(s) 87, 288
Sau3AI GATC 3 cut(s) 151, 315, 355
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 2 cut(s) 150, 251
ScrFI CCNGG 1 cut(s) 252
SetI ASST 4 cut(s) 48, 127, 315, 397
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 2 cut(s) 311, 345
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 1 cut(s) 285
SseBI AGGCCT 1 cut(s) 24
SsiI CCGC 1 cut(s) 367
StuI AGGCCT 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 1 cut(s) 127
TaqII GACCGA 1 cut(s) 194
TasI AATT 1 cut(s) 285
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 2 cut(s) 53, 379
Tru1I TTAA 2 cut(s) 87, 288
Tru9I TTAA 2 cut(s) 87, 288
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 3 cut(s) 79, 125, 158
Tsp45I GTSAC 3 cut(s) 79, 125, 158
TspDTI ATGAA 3 cut(s) 216, 297, 392
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 1 cut(s) 84
Van91I CCANNNNNTGG 2 cut(s) 215, 352
VpaK11BI GGWCC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.