Rorug06G0120300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000707
Physical Location & Seq
Forward (+)
16522596 .. 16525966
3371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0120300.1

Sequence Viewer

Length: 1245 bp
ATGGAAAATTTTTCTCAAATTAAACCCACTTCTTATTTGCAGCCTGTGGTATTCCGGCGAAGCTTCACGGTGGATGATGGGGTTAACATGGATTTGGATTTCTTCTTTGAAAATCTATATGGTATGTGCAAAGAGTGTGGTCTGGTTACCCATGTCGGCTTACCTTATACTGGAATACCGTTGTCGGTAGAAGCCAGAACTGATCAATCACTGACATGGTGGAACCTGGAACGTGCTCTGAACCAGGTGGACATGACACCACATGATGGACTGGCATTGATTTTTGGGTCTACATCCACAGGTGAGCCAGTGAAGAATGGCAGCGAACCACGATCAGGAGGTTCAAAGCAGGGGCTAAGTGGGCTTGATAGTTCAGCAGAGAATGAGTCAGTGGAGATAGCTCCTAGCTGTGGCATGAGTAGAAAGTGTGGGGAAGAGGATGGTGTTTCTCCAAAGAAGATGAGGATGAGTCTGGCAATTGGTAGGACTAATTTGGATGCTATGACAATGGGGTTATGCTCTGTGAAACCTGTCAAAGAAGTATATAAGAAGAGGCCGGGGAGGCCGAAGGGTGCCAAGAATAACGTAGAGAAACTCAAGGTGGTGCAGGCCTCACCTATGAGGAAATCTTCGGCAAAAAAGCTCAAGACTTCAAGGAAGGAAGAGAAATTGGTGAATGGATTACCAGAATTCATCGTTGTGGAGGAGGTCAAGGGTTCCAACCTGTCAAAGGTAATCACAAGGTTTCATATTGTTCAAATATCGAAGGAAGCCTTCTTGCATAGCATTGTAGACATGAACTCCCTTTGTTCCATCTTAGCTGTTCTCTCATTTCTTTTGTTCACTACAACTATAGAATCATCAAGAATAGTTGCAGGTGGCTACAAGGAAAATGCTATTGAAAGGCAGCCCATGCCACAAAACTTATGGCAACTCATGAAAGAACAACTTGACATTGATAATGTTGATCTTTCTGATGATATAGATGAGAAACCTGACTGCCATGATCTGAAACCTCGCATTGAGTTTGATATGGTTGAGTTAAAATGGAATAAATACAATGATGGTGAAGTAGTAAAATCCAGTACTCTTGAAGACAAGTCTGATTCTGTTAAGGAAATAGGTTACATGCGCCCAAACAATAATGGTCATGAAGAAATGCAGCCATTTGAAGCCGAAGCCAACATGAATGCATCTGATGAAGACTTTGAATCAAGGCTATATACTTCTGTTTATAATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

414

Amino Acids

46.33

Weight (kDa)

5.36

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1236
AarI CACCTGC 1 cut(s) 866
Acc36I ACCTGC 1 cut(s) 866
AccB1I GGYRCC 1 cut(s) 572
AccB7I CCANNNNNTGG 1 cut(s) 266
AccI GTMKAC 2 cut(s) 290, 792
AcsI RAATTY 2 cut(s) 7, 689
AfaI GTAC 1 cut(s) 1087
AfiI CCNNNNNNNGG 5 cut(s) 170, 266, 335, 410, 730
AgsI TTSAA 8 cut(s) 110, 345, 654, 758, 902, 1094, 1172, 1211
AjnI CCWGG 2 cut(s) 225, 243
AluBI AGCT 5 cut(s) 63, 401, 408, 643, 821
AluI AGCT 5 cut(s) 63, 401, 408, 643, 821
Alw21I GWGCWC 1 cut(s) 238
AoxI GGCC 3 cut(s) 554, 563, 609
ApeKI GCWGC 4 cut(s) 40, 321, 907, 1162
ApoI RAATTY 2 cut(s) 7, 689
AspLEI GCGC 1 cut(s) 1134
AsuC2I CCSGG 1 cut(s) 558
AsuHPI GGTGA 4 cut(s) 314, 606, 685, 1079
BanI GGYRCC 1 cut(s) 572
BbsI GAAGAC 2 cut(s) 1101, 1209
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 4 cut(s) 52, 333, 919, 1174
BccI CCATC 5 cut(s) 71, 260, 434, 821, 1058
BciT130I CCWGG 2 cut(s) 227, 245
BclI TGATCA 1 cut(s) 202
BcnI CCSGG 1 cut(s) 558
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 852
BfuAI ACCTGC 1 cut(s) 866
BglI GCCNNNNNGGC 1 cut(s) 562
BisI GCNGC 4 cut(s) 41, 322, 908, 1163
BlsI GCNGC 4 cut(s) 42, 323, 909, 1164
BmcAI AGTACT 1 cut(s) 1087
Bme1390I CCNGG 3 cut(s) 227, 245, 558
BmiI GGNNCC 3 cut(s) 224, 574, 718
BmrFI CCNGG 3 cut(s) 227, 245, 558
BmsI GCATC 2 cut(s) 487, 1202
BpiI GAAGAC 2 cut(s) 1101, 1209
BpuEI CTTGAG 2 cut(s) 581, 629
BpuMI CCSGG 1 cut(s) 558
BsaJI CCNNGG 1 cut(s) 557
BsaXI ACNNNNNCTCC 2 cut(s) 785, 815
Bsc4I CCNNNNNNNGG 5 cut(s) 170, 266, 335, 410, 730
Bse1I ACTGG 4 cut(s) 175, 276, 308, 1083
BseBI CCWGG 2 cut(s) 227, 245
BseDI CCNNGG 1 cut(s) 557
BseGI GGATG 5 cut(s) 79, 293, 445, 471, 502
BseLI CCNNNNNNNGG 5 cut(s) 170, 266, 335, 410, 730
BseNI ACTGG 4 cut(s) 175, 276, 308, 1083
BseRI GAGGAG 1 cut(s) 719
BseXI GCAGC 4 cut(s) 52, 333, 919, 1174
BsgI GTGCAG 1 cut(s) 626
BshFI GGCC 3 cut(s) 556, 565, 611
BshNI GGYRCC 1 cut(s) 572
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 2 cut(s) 55, 557
BslI CCNNNNNNNGG 5 cut(s) 170, 266, 335, 410, 730
BsmI GAATGC 1 cut(s) 1195
BsnI GGCC 3 cut(s) 556, 565, 611
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 4 cut(s) 202, 332, 967, 1006
BspANI GGCC 3 cut(s) 556, 565, 611
BspHI TCATGA 2 cut(s) 936, 1150
BspLI GGNNCC 3 cut(s) 224, 574, 718
BspMI ACCTGC 1 cut(s) 866
BspT107I GGYRCC 1 cut(s) 572
BsrI ACTGG 4 cut(s) 175, 276, 308, 1083
BssECI CCNNGG 1 cut(s) 557
BssMI GATC 4 cut(s) 202, 332, 967, 1006
Bst2UI CCWGG 2 cut(s) 227, 245
Bst4CI ACNGT 2 cut(s) 70, 180
Bst6I CTCTTC 3 cut(s) 429, 545, 657
BstAPI GCANNNNNTGC 1 cut(s) 913
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 2 cut(s) 356, 817
BstEII GGTNACC 1 cut(s) 145
BstENI CCTNNNNNAGG 1 cut(s) 728
BstF5I GGATG 5 cut(s) 79, 293, 445, 471, 502
BstHHI GCGC 1 cut(s) 1134
BstKTI GATC 4 cut(s) 205, 335, 970, 1009
BstMBI GATC 4 cut(s) 202, 332, 967, 1006
BstMWI GCNNNNNNNGC 3 cut(s) 361, 562, 913
BstNI CCWGG 2 cut(s) 227, 245
BstNSI RCATGY 1 cut(s) 1132
BstPI GGTNACC 1 cut(s) 145
BstSCI CCNGG 3 cut(s) 225, 243, 556
BstSFI CTRYAG 1 cut(s) 852
BstV1I GCAGC 4 cut(s) 52, 333, 919, 1174
BstV2I GAAGAC 2 cut(s) 1101, 1209
BsuRI GGCC 3 cut(s) 556, 565, 611
BtsCI GGATG 5 cut(s) 79, 293, 445, 471, 502
BtsIMutI CAGTG 3 cut(s) 209, 315, 396
BveI ACCTGC 1 cut(s) 866
Cac8I GCNNGC 1 cut(s) 609
CciI TCATGA 2 cut(s) 936, 1150
CfoI GCGC 1 cut(s) 1134
CsiI ACCWGGT 1 cut(s) 243
Csp6I GTAC 1 cut(s) 1086
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviQI GTAC 1 cut(s) 1086
DdeI CTNAG 2 cut(s) 356, 817
DpnI GATC 4 cut(s) 204, 334, 969, 1008
DpnII GATC 4 cut(s) 202, 332, 967, 1006
Eam1104I CTCTTC 3 cut(s) 429, 545, 657
EarI CTCTTC 3 cut(s) 429, 545, 657
Eco147I AGGCCT 1 cut(s) 611
Eco91I GGTNACC 1 cut(s) 145
EcoNI CCTNNNNNAGG 1 cut(s) 728
EcoO65I GGTNACC 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 689
EcoRII CCWGG 2 cut(s) 225, 243
EcoT22I ATGCAT 1 cut(s) 1195
FalI AAGNNNNNCTT 4 cut(s) 758, 790, 933, 965
FbaI TGATCA 1 cut(s) 202
FblI GTMKAC 2 cut(s) 290, 792
Fnu4HI GCNGC 4 cut(s) 41, 322, 908, 1163
FokI GGATG 5 cut(s) 86, 280, 452, 478, 509
Fsp4HI GCNGC 4 cut(s) 41, 322, 908, 1163
FspBI CTAG 1 cut(s) 405
GlaI GCGC 1 cut(s) 1133
GluI GCNGC 4 cut(s) 41, 322, 908, 1163
HaeIII GGCC 3 cut(s) 556, 565, 611
HapII CCGG 2 cut(s) 55, 557
HhaI GCGC 1 cut(s) 1134
Hin6I GCGC 1 cut(s) 1132
HinP1I GCGC 1 cut(s) 1132
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 5 cut(s) 386, 469, 857, 1106, 1211
HpaI GTTAAC 1 cut(s) 85
HpaII CCGG 2 cut(s) 55, 557
HphI GGTGA 4 cut(s) 314, 606, 685, 1079
Hpy166II GTNNAC 5 cut(s) 85, 250, 291, 793, 843
Hpy188I TCNGA 5 cut(s) 240, 976, 1011, 1105, 1198
Hpy188III TCNNGA 6 cut(s) 336, 646, 864, 937, 1091, 1151
Hpy8I GTNNAC 5 cut(s) 85, 250, 291, 793, 843
HpyAV CCTTC 4 cut(s) 562, 652, 760, 784
HpyCH4III ACNGT 2 cut(s) 70, 180
HpyCH4IV ACGT 2 cut(s) 232, 585
HpyCH4V TGCA 7 cut(s) 40, 129, 607, 781, 875, 1162, 1193
HpyF10VI GCNNNNNNNGC 3 cut(s) 361, 562, 913
HpyF3I CTNAG 2 cut(s) 356, 817
HpySE526I ACGT 2 cut(s) 232, 585
HspAI GCGC 1 cut(s) 1132
Ksp22I TGATCA 1 cut(s) 202
KspAI GTTAAC 1 cut(s) 85
Kzo9I GATC 4 cut(s) 202, 332, 967, 1006
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 4 cut(s) 52, 333, 919, 1174
LweI GCATC 2 cut(s) 487, 1202
MabI ACCWGGT 1 cut(s) 243
MaeI CTAG 1 cut(s) 405
MaeII ACGT 2 cut(s) 232, 585
MaeIII GTNAC 2 cut(s) 145, 1124
MalI GATC 4 cut(s) 204, 334, 969, 1008
MboI GATC 4 cut(s) 202, 332, 967, 1006
MfeI CAATTG 1 cut(s) 477
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 6 cut(s) 7, 18, 477, 490, 668, 689
MlyI GAGTC 2 cut(s) 395, 478
MmeI TCCRAC 1 cut(s) 744
Mph1103I ATGCAT 1 cut(s) 1195
MseI TTAA 4 cut(s) 21, 84, 1043, 1113
MslI CAYNNNNRTG 2 cut(s) 214, 698
MspI CCGG 2 cut(s) 55, 557
MspR9I CCNGG 3 cut(s) 227, 245, 558
MunI CAATTG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 1195
MvaI CCWGG 2 cut(s) 227, 245
MwoI GCNNNNNNNGC 3 cut(s) 361, 562, 913
NciI CCSGG 1 cut(s) 558
NdeII GATC 4 cut(s) 202, 332, 967, 1006
NlaIV GGNNCC 3 cut(s) 224, 574, 718
NsiI ATGCAT 1 cut(s) 1195
NspI RCATGY 1 cut(s) 1132
PagI TCATGA 2 cut(s) 936, 1150
PaqCI CACCTGC 1 cut(s) 866
PceI AGGCCT 1 cut(s) 611
PctI GAATGC 1 cut(s) 1195
PfeI GAWTC 3 cut(s) 857, 1106, 1211
PflMI CCANNNNNTGG 1 cut(s) 266
PkrI GCNGC 4 cut(s) 42, 323, 909, 1164
PleI GAGTC 2 cut(s) 394, 477
PpsI GAGTC 2 cut(s) 394, 477
PsiI TTATAA 1 cut(s) 1236
Psp6I CCWGG 2 cut(s) 225, 243
PspEI GGTNACC 1 cut(s) 145
PspGI CCWGG 2 cut(s) 225, 243
PspN4I GGNNCC 3 cut(s) 224, 574, 718
RsaI GTAC 1 cut(s) 1087
RsaNI GTAC 1 cut(s) 1086
RseI CAYNNNNRTG 2 cut(s) 214, 698
SaqAI TTAA 4 cut(s) 21, 84, 1043, 1113
SatI GCNGC 4 cut(s) 41, 322, 908, 1163
Sau3AI GATC 4 cut(s) 202, 332, 967, 1006
ScaI AGTACT 1 cut(s) 1087
SchI GAGTC 2 cut(s) 395, 478
ScrFI CCNGG 3 cut(s) 227, 245, 558
SduI GDGCHC 1 cut(s) 238
SexAI ACCWGGT 1 cut(s) 243
SfaNI GCATC 2 cut(s) 487, 1202
SfcI CTRYAG 1 cut(s) 852
SfiI GGCCNNNNNGGCC 1 cut(s) 562
SmiMI CAYNNNNRTG 2 cut(s) 214, 698
SmlI CTYRAG 2 cut(s) 596, 644
SmoI CTYRAG 2 cut(s) 596, 644
Sse9I AATT 6 cut(s) 7, 18, 477, 490, 668, 689
SseBI AGGCCT 1 cut(s) 611
SspMI CTAG 1 cut(s) 405
StuI AGGCCT 1 cut(s) 611
StyD4I CCNGG 3 cut(s) 225, 243, 556
TaaI ACNGT 2 cut(s) 70, 180
TaiI ACGT 2 cut(s) 235, 588
TaqI TCGA 1 cut(s) 764
TasI AATT 6 cut(s) 7, 18, 477, 490, 668, 689
TatI WGTACW 1 cut(s) 1085
TfiI GAWTC 3 cut(s) 857, 1106, 1211
Tru1I TTAA 4 cut(s) 21, 84, 1043, 1113
Tru9I TTAA 4 cut(s) 21, 84, 1043, 1113
TscAI CASTG 3 cut(s) 216, 315, 396
TseI GCWGC 4 cut(s) 40, 321, 907, 1162
TspDTI ATGAA 7 cut(s) 682, 737, 812, 953, 1167, 1202, 1215
TspRI CASTG 3 cut(s) 216, 315, 396
Van91I CCANNNNNTGG 1 cut(s) 266
XagI CCTNNNNNAGG 1 cut(s) 728
XapI RAATTY 2 cut(s) 7, 689
XceI RCATGY 1 cut(s) 1132
XcmI CCANNNNNNNNNTGG 1 cut(s) 924
XmiI GTMKAC 2 cut(s) 290, 792
XspI CTAG 1 cut(s) 405
ZrmI AGTACT 1 cut(s) 1087
Zsp2I ATGCAT 1 cut(s) 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.