Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Reverse (-)

63557672 .. 63558031

Gene Structure 360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAGTACCAGTACCAGAGCAGCTACCCTATGAAAAAGCTGACGCAATCTGATGTGAGTGAGAGACTCGCAGTGCCGAAAGCTATTGCTGCAGTGATGCCTCCTGCAGAACCAGAACACGACATTCCAATCAGAGTGTTGGACGATTTGGGCCACGTTTATCAGTTCCGTTTGTCTCGAAGAAGAAGAGGTCCACATACCAAACCAGTTTTCCAGTCCAGAGAATGGGGAGATTTCGTCAAATACCGAGGAGCCAAAGTTGGTGACCTGATTCATTTCTGGCCGGAGGTAAATGAAGATGCAGGTACACACTATCGAATTGTCCTGTTCAGAAACTATCTTGGATCTTCATCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.83

Weight (kDa)

9.26

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	12 - 109	3.8e-07	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	293
AccB7I	CCANNNNNTGG	1 cut(s)	225
AclWI	GGATC	1 cut(s)	352
AcoI	YGGCCR	1 cut(s)	281
AfaI	GTAC	3 cut(s)	8, 14, 307
AfiI	CCNNNNNNNGG	1 cut(s)	225
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	3 cut(s)	24, 40, 83
AluI	AGCT	3 cut(s)	24, 40, 83
Alw26I	GTCTC	2 cut(s)	58, 180
AlwI	GGATC	1 cut(s)	352
AoxI	GGCC	2 cut(s)	151, 281
ApeKI	GCWGC	2 cut(s)	21, 89
AspS9I	GGNCC	2 cut(s)	151, 191
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	33, 76
BcoDI	GTCTC	2 cut(s)	58, 180
BfmI	CTRYAG	2 cut(s)	90, 105
BfuAI	ACCTGC	1 cut(s)	293
BisI	GCNGC	2 cut(s)	22, 90
BlsI	GCNGC	2 cut(s)	23, 91
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	151, 191
BmiI	GGNNCC	1 cut(s)	253
BmsI	GCATC	2 cut(s)	87, 289
BsaBI	GATNNNNATC	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	247
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 222, 243, 252, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	3 cut(s)	10, 206, 214
Bse8I	GATNNNNATC	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	247
BseJI	GATNNNNATC	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseNI	ACTGG	3 cut(s)	10, 206, 214
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	33, 76
BshFI	GGCC	2 cut(s)	153, 283
BsiSI	CCGG	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	2 cut(s)	58, 180
BsnI	GGCC	2 cut(s)	153, 283
Bsp143I	GATC	1 cut(s)	344
BspANI	GGCC	2 cut(s)	153, 283
BspLI	GGNNCC	1 cut(s)	253
BspMAI	CTGCAG	2 cut(s)	94, 109
BspMI	ACCTGC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	352
BsrI	ACTGG	3 cut(s)	10, 206, 214
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	1 cut(s)	344
Bst6I	CTCTTC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	357
BstEII	GGTNACC	1 cut(s)	263
BstKTI	GATC	1 cut(s)	347
BstMAI	GTCTC	2 cut(s)	58, 180
BstMBI	GATC	1 cut(s)	344
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstPI	GGTNACC	1 cut(s)	263
BstSFI	CTRYAG	2 cut(s)	90, 105
BstV1I	GCAGC	2 cut(s)	33, 76
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuRI	GGCC	2 cut(s)	153, 283
BtsI	GCAGTG	2 cut(s)	78, 99
BtsIMutI	CAGTG	2 cut(s)	78, 99
BveI	ACCTGC	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	151, 191
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	3 cut(s)	7, 13, 306
CviJI	RGCY	6 cut(s)	24, 40, 83, 153, 254, 283
CviKI_1	RGCY	6 cut(s)	24, 40, 83, 153, 254, 283
CviQI	GTAC	3 cut(s)	7, 13, 306
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	1 cut(s)	346
DpnII	GATC	1 cut(s)	344
EaeI	YGGCCR	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	191
Eco91I	GGTNACC	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	263
FaiI	YATR	2 cut(s)	32, 198
Fnu4HI	GCNGC	2 cut(s)	22, 90
Fsp4HI	GCNGC	2 cut(s)	22, 90
GluI	GCNGC	2 cut(s)	22, 90
HaeIII	GGCC	2 cut(s)	153, 283
HapII	CCGG	1 cut(s)	284
HgaI	GACGC	1 cut(s)	52
HinfI	GANTC	2 cut(s)	66, 271
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	2 cut(s)	194, 308
Hpy188I	TCNGA	3 cut(s)	52, 134, 332
Hpy188III	TCNNGA	2 cut(s)	177, 219
Hpy8I	GTNNAC	2 cut(s)	194, 308
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	3 cut(s)	92, 107, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	251
Lsp1109I	GCAGC	2 cut(s)	33, 76
LweI	GCATC	2 cut(s)	87, 289
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	1 cut(s)	346
MboI	GATC	1 cut(s)	344
MboII	GAAGA	5 cut(s)	192, 195, 198, 308, 339
MflI	RGATCY	1 cut(s)	344
MluCI	AATT	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	4 cut(s)	111, 182, 242, 280
MspI	CCGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	1 cut(s)	344
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	23, 91
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PspEI	GGTNACC	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	151, 191
PstI	CTGCAG	2 cut(s)	94, 109
PsuI	RGATCY	1 cut(s)	344
RsaI	GTAC	3 cut(s)	8, 14, 307
RsaNI	GTAC	3 cut(s)	7, 13, 306
SatI	GCNGC	2 cut(s)	22, 90
Sau3AI	GATC	1 cut(s)	344
Sau96I	GGNCC	2 cut(s)	151, 191
SchI	GAGTC	1 cut(s)	60
SetI	ASST	8 cut(s)	26, 42, 85, 159, 193, 270, 291, 307
SfaNI	GCATC	2 cut(s)	87, 289
SfcI	CTRYAG	2 cut(s)	90, 105
SinI	GGWCC	1 cut(s)	191
Sse9I	AATT	1 cut(s)	318
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	2 cut(s)	178, 316
TasI	AATT	1 cut(s)	318
TfiI	GAWTC	1 cut(s)	271
TscAI	CASTG	2 cut(s)	78, 99
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	2 cut(s)	21, 89
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	4 cut(s)	47, 263, 309, 339
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	2 cut(s)	78, 99
Van91I	CCANNNNNTGG	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.