Rh7CG052800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000707
Physical Location & Seq
Forward (+)
3826419 .. 3827032
614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG052800.1

Sequence Viewer

Length: 291 bp
ATGGAGAACCAGTACCAGAGCCGCTGCCCTGTGAAAAAGCTGAAGCCCACTGATGTGAGTGATAGGCTTGCATTGCCGAAACATATGGCTGCAGTACTGCCTCCTGCACAACCAGGAAGCGAGATTCCTATCCGAGTGTTGGACCGATGGCACCGCGTTTATCATTTCCGTTTGTCTGTAAGAAGAGGCCGGCTTCTCAAACCAGTTTTCCAGTACAAAGAATGGCAAGACTTCGTCAGAGACCACGGAGCCGAAGAGGGCAACCTGATTTACTTGTTGCGGGAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.41

Weight (kDa)

9.83

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 17 - 91 5.6e-07 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 150
AccII CGCG 1 cut(s) 156
AciI CCGC 3 cut(s) 22, 154, 280
AcuI CTGAAG 1 cut(s) 62
AfaI GTAC 3 cut(s) 14, 96, 215
AfiI CCNNNNNNNGG 1 cut(s) 139
AjnI CCWGG 1 cut(s) 112
AleI CACNNNNGTG 1 cut(s) 53
AluBI AGCT 2 cut(s) 40, 286
AluI AGCT 2 cut(s) 40, 286
Alw26I GTCTC 1 cut(s) 234
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 24, 89
AspS9I GGNCC 1 cut(s) 142
AvaII GGWCC 1 cut(s) 142
BanI GGYRCC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 11, 76
BccI CCATC 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 90
BisI GCNGC 3 cut(s) 22, 25, 90
BlsI GCNGC 3 cut(s) 23, 26, 91
BmcAI AGTACT 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 152, 250
BmrFI CCNGG 1 cut(s) 114
BsaBI GATNNNNATC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 244
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse118I RCCGGY 1 cut(s) 189
Bse1I ACTGG 3 cut(s) 10, 203, 211
Bse3DI GCAATG 1 cut(s) 71
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 244
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 71
BseNI ACTGG 3 cut(s) 10, 203, 211
BseXI GCAGC 2 cut(s) 11, 76
BsgI GTGCAG 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 189
BshNI GGYRCC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 234
BsnI GGCC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 234
BspACI CCGC 3 cut(s) 22, 154, 280
BspANI GGCC 1 cut(s) 189
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 152, 250
BspMAI CTGCAG 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 189
BsrI ACTGG 3 cut(s) 10, 203, 211
BssAI RCCGGY 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 114
Bst6I CTCTTC 2 cut(s) 178, 249
BstC8I GCNNGC 2 cut(s) 69, 191
BstDSI CCRYGG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 90
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 11, 76
BsuRI GGCC 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 69, 191
Cfr10I RCCGGY 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 3 cut(s) 13, 95, 214
CviJI RGCY 9 cut(s) 21, 40, 46, 67, 89, 189, 193, 251, 286
CviKI_1 RGCY 9 cut(s) 21, 40, 46, 67, 89, 189, 193, 251, 286
CviQI GTAC 3 cut(s) 13, 95, 214
Eam1104I CTCTTC 2 cut(s) 178, 249
EarI CTCTTC 2 cut(s) 178, 249
Eco31I GGTCTC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 112
FaiI YATR 2 cut(s) 84, 86
FauI CCCGC 1 cut(s) 273
FauNDI CATATG 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 22, 25, 90
Fsp4HI GCNGC 3 cut(s) 22, 25, 90
GluI GCNGC 3 cut(s) 22, 25, 90
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 190
HinfI GANTC 1 cut(s) 124
HpaII CCGG 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 134, 239
HpyCH4V TGCA 3 cut(s) 71, 92, 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
KroI GCCGGC 1 cut(s) 189
KroNI GCCGGC 1 cut(s) 191
LmnI GCTCC 2 cut(s) 248, 283
Lsp1109I GCAGC 2 cut(s) 11, 76
MboII GAAGA 2 cut(s) 195, 266
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 3 cut(s) 111, 179, 250
MroNI GCCGGC 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 73
NaeI GCCGGC 1 cut(s) 191
NdeI CATATG 1 cut(s) 84
NgoMIV GCCGGC 1 cut(s) 189
NlaIV GGNNCC 2 cut(s) 152, 250
OliI CACNNNNGTG 1 cut(s) 53
PdiI GCCGGC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 124
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 3 cut(s) 23, 26, 91
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 152, 250
PspPI GGNCC 1 cut(s) 142
PstI CTGCAG 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 3 cut(s) 14, 96, 215
RsaNI GTAC 3 cut(s) 13, 95, 214
RseI CAYNNNNRTG 1 cut(s) 53
SatI GCNGC 3 cut(s) 22, 25, 90
Sau96I GGNCC 1 cut(s) 142
ScaI AGTACT 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 114
SetI ASST 3 cut(s) 42, 267, 288
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 53
SsiI CCGC 3 cut(s) 22, 154, 280
StyD4I CCNGG 1 cut(s) 112
TaqII GACCGA 1 cut(s) 159
TatI WGTACW 2 cut(s) 94, 213
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 1 cut(s) 55
TseI GCWGC 2 cut(s) 24, 89
TspGWI ACGGA 2 cut(s) 158, 261
TspRI CASTG 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 142
ZrmI AGTACT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.