Prupe.1G574200_v2.0.a1

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000707
Physical Location & Seq
Reverse (-)
46781535 .. 46781888
354 bp
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UTR
Exon/CDS
Intron
Prupe.1G574200.1

Sequence Viewer

Length: 354 bp
ATGGCGGCTCCGTTTGAAAGACGCCTTACAGAAACGGATACAGTGGGCAAATTGTCCCTTCCGATTGAATGGCTTAGGATACTGCCTCCGATCGAACAAGGAAGCCATGAGGTCAAGATTTATGTTTCGGACGGGCTCGGGTTTTATGAGTTTCGATGTTCCACTATCAAGATGGGCCGTTACCGGAAGCCCTTTCTTCAACCTGAGGACTGGCTCAAATTTGTTGATCACAAAGGGCTCAAAGTTGGCGACAAGATCATTCTTGATTCCGAGCCCAACGACTTTATCGGAAGCCATTTCAGAATTAGAGCACAAAAGTTCAACCATGAAGAAAATAAGTGGGTTGATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

118

Amino Acids

13.75

Weight (kDa)

6.91

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 22
AgsI TTSAA 4 cut(s) 17, 68, 200, 322
Alw21I GWGCWC 1 cut(s) 313
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 137
AxyI CCTNAGG 1 cut(s) 204
BanII GRGCYC 3 cut(s) 138, 240, 276
Bbv12I GWGCWC 1 cut(s) 313
BccI CCATC 1 cut(s) 166
BceAI ACGGC 1 cut(s) 162
BciVI GTATCC 2 cut(s) 31, 72
BclI TGATCA 1 cut(s) 226
BfuI GTATCC 2 cut(s) 31, 72
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 9
Bpu10I CCTNAGC 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 22
BsaWI WCCGGW 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 215
Bse21I CCTNAGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 215
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 177
BsiEI CGRYCG 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 313
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 4 cut(s) 138, 240, 276, 313
Bsp143I GATC 3 cut(s) 90, 226, 255
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 215
BssMI GATC 3 cut(s) 90, 226, 255
BssNI GRCGYC 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 22
BstDEI CTNAG 2 cut(s) 74, 204
BstKTI GATC 3 cut(s) 93, 229, 258
BstMBI GATC 3 cut(s) 90, 226, 255
BstMCI CGRYCG 1 cut(s) 93
Bsu36I CCTNAGG 1 cut(s) 204
BsuI GTATCC 2 cut(s) 31, 72
BsuRI GGCC 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 1 cut(s) 30
CviAII CATG 2 cut(s) 107, 326
DdeI CTNAG 2 cut(s) 74, 204
DpnI GATC 3 cut(s) 92, 228, 257
DpnII GATC 3 cut(s) 90, 226, 255
Eco24I GRGCYC 3 cut(s) 138, 240, 276
Eco81I CCTNAGG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 137
EcoT38I GRGCYC 3 cut(s) 138, 240, 276
FaeI CATG 2 cut(s) 110, 329
FaiI YATR 4 cut(s) 108, 123, 147, 327
FaqI GGGAC 1 cut(s) 40
FatI CATG 2 cut(s) 106, 325
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 6
FriOI GRGCYC 3 cut(s) 138, 240, 276
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 177
HapII CCGG 1 cut(s) 184
HgaI GACGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 2 cut(s) 110, 329
HinfI GANTC 1 cut(s) 266
HpaII CCGG 1 cut(s) 184
Hpy188I TCNGA 6 cut(s) 63, 90, 130, 271, 290, 302
Hpy188III TCNNGA 3 cut(s) 115, 169, 263
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 43
HpyF3I CTNAG 2 cut(s) 74, 204
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 2 cut(s) 110, 329
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 3 cut(s) 90, 226, 255
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 3 cut(s) 196, 197, 216
MaeIII GTNAC 1 cut(s) 179
MalI GATC 3 cut(s) 92, 228, 257
MboI GATC 3 cut(s) 90, 226, 255
MboII GAAGA 2 cut(s) 188, 341
MhlI GDGCHC 4 cut(s) 138, 240, 276, 313
MluCI AATT 3 cut(s) 50, 218, 303
MnlI CCTC 3 cut(s) 96, 103, 199
MspI CCGG 1 cut(s) 184
NdeII GATC 3 cut(s) 90, 226, 255
NlaIII CATG 2 cut(s) 110, 329
NlaIV GGNNCC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 7
Ple19I CGATCG 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 175
PvuI CGATCG 1 cut(s) 93
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 90, 226, 255
Sau96I GGNCC 1 cut(s) 175
SduI GDGCHC 4 cut(s) 138, 240, 276, 313
SetI ASST 2 cut(s) 114, 205
Sse9I AATT 3 cut(s) 50, 218, 303
SsiI CCGC 1 cut(s) 5
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 93, 154
TasI AATT 3 cut(s) 50, 218, 303
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 266
TscAI CASTG 1 cut(s) 48
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 1 cut(s) 48
XapI RAATTY 1 cut(s) 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.