Rroxscaffold_3G00271570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000707
Physical Location & Seq
Forward (+)
63950329 .. 63959252
8924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271570.1

Sequence Viewer

Length: 957 bp
ATGGCGTACGAGTCCCACTTTATGAAGTATCTGACGGATACAGATGTTAAAGACAGACTTGAAGTGACTCGTAAGATGGCTAACTTGATGCCTACTGCAGCACCAGGATGTCGCCTTCCAATCAGAGTGTTGGACGATCAGGGTTACTTTTATGAGTTCTACTTGGCTGGAAGAAAAGGCAGGTCTAAGAACCCTTATTTCATGCCCAGAGAGTGGCTAGCCTTCATCAGAAGACGAGAAGCCAGTCAAGGCGACTCCCTCTGTTTCTGGAAAGAAGTGAACGAATTTAGGGTTTTTGAGGCCAAACAAGGCTGTGATCCTCTTCTAGGGTGGCTTTGCCGGCAGCAAAGGCATCATTGTGAAGGCCATCGACGAAGGCATGGGCGACAATGCCTCGTTGCCGGAATCAAGAAGTACCCGAGCAAGGACTTGACGGTGAAGCCAGATCATCAGCGCCGACTCTTCAAATCTACTTCACGAGAAAAAGCCCCAAAATTTAGGGATTCCAAGAATTACGAACTCGAATCGTCACCTCGACCGGGAGGAACAATTTCATGGGCCTACGTCAAAGCCTGCGAAAATTTGGATAAGATCGGATCTTATGATCGGGCGAGGGAAGTTGGAAACTTCTTTAAAAAGTCTATAAAGACTTTGAAAAAGAAAAAGGAGTCAAGCAGCCCATATGGTAATATGGGGGGCTGCGTTGTGATAATACCGAAAATCTTTGAAAACATGGAGGAGGATAGAGAGGAATCAGAATCGGAGGAAGAGGATAATAGATTAGATGAAGCAAAAACAGTTCCGGAAGAAGAGGATCGAATTGTGAAAATGAAGAAGATAATCTACAAGTTCGTGTGGTCGAACAGAAAAAAGTTCGAGAAAAAACAAGTGGGAGAAAGAGCTTCAAAGCAAAAGGAGGAGGAGATAAGATATATGACGTGGAGAAAGATAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

37.7

Weight (kDa)

9.49

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 171
AccB7I CCANNNNNTGG 1 cut(s) 213
AccIII TCCGGA 1 cut(s) 802
AclWI GGATC 3 cut(s) 311, 604, 822
AcsI RAATTY 3 cut(s) 284, 494, 580
AfaI GTAC 2 cut(s) 8, 416
AfiI CCNNNNNNNGG 4 cut(s) 213, 326, 424, 539
AgsI TTSAA 5 cut(s) 62, 466, 655, 728, 906
AjiI CACGTC 1 cut(s) 939
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 1 cut(s) 902
AluI AGCT 1 cut(s) 902
AlwI GGATC 3 cut(s) 311, 604, 822
Ama87I CYCGRG 1 cut(s) 418
Aor13HI TCCGGA 1 cut(s) 802
AoxI GGCC 3 cut(s) 300, 364, 558
ApeKI GCWGC 4 cut(s) 98, 343, 675, 699
ApoI RAATTY 3 cut(s) 284, 494, 580
Asp700I GAANNNNTTC 1 cut(s) 550
AspLEI GCGC 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 558
AsuC2I CCSGG 1 cut(s) 540
AsuHPI GGTGA 2 cut(s) 448, 522
AsuNHI GCTAGC 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 418
BaeI ACNNNNGTAYC 2 cut(s) 30, 63
BarI GAAGNNNNNNTAC 2 cut(s) 827, 859
BauI CACGAG 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 238
BbvI GCAGC 4 cut(s) 110, 355, 686, 687
BccI CCATC 2 cut(s) 70, 375
BciT130I CCWGG 1 cut(s) 105
BciVI GTATCC 1 cut(s) 31
BcnI CCSGG 1 cut(s) 540
BfaI CTAG 2 cut(s) 218, 326
BfmI CTRYAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 457
BfuAI ACCTGC 1 cut(s) 171
BfuI GTATCC 1 cut(s) 31
BisI GCNGC 4 cut(s) 99, 344, 676, 700
BlsI GCNGC 4 cut(s) 100, 345, 677, 701
Bme1390I CCNGG 2 cut(s) 105, 540
BmeT110I CYCGRG 1 cut(s) 418
BmgBI CACGTC 1 cut(s) 939
BmgT120I GGNCC 1 cut(s) 558
BmrFI CCNGG 2 cut(s) 105, 540
BmsI GCATC 2 cut(s) 78, 361
BmtI GCTAGC 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 540
BsaWI WCCGGW 1 cut(s) 802
Bsc4I CCNNNNNNNGG 4 cut(s) 213, 326, 424, 539
Bse118I RCCGGY 1 cut(s) 339
Bse1I ACTGG 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 802
BseBI CCWGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 4 cut(s) 213, 326, 424, 539
BseNI ACTGG 1 cut(s) 243
BseRI GAGGAG 3 cut(s) 752, 932, 935
BseXI GCAGC 4 cut(s) 110, 355, 686, 687
Bsh1285I CGRYCG 1 cut(s) 539
BshFI GGCC 3 cut(s) 302, 366, 560
BsiEI CGRYCG 1 cut(s) 539
BsiHKCI CYCGRG 1 cut(s) 418
BsiSI CCGG 4 cut(s) 340, 402, 539, 803
BsiWI CGTACG 1 cut(s) 6
BslI CCNNNNNNNGG 4 cut(s) 213, 326, 424, 539
BsnI GGCC 3 cut(s) 302, 366, 560
BsoBI CYCGRG 1 cut(s) 418
Bsp13I TCCGGA 1 cut(s) 802
Bsp143I GATC 7 cut(s) 136, 316, 445, 591, 596, 604, 814
BspANI GGCC 3 cut(s) 302, 366, 560
BspEI TCCGGA 1 cut(s) 802
BspMAI CTGCAG 1 cut(s) 100
BspMI ACCTGC 1 cut(s) 171
BspOI GCTAGC 1 cut(s) 221
BspPI GGATC 3 cut(s) 311, 604, 822
BsrFI RCCGGY 1 cut(s) 339
BsrI ACTGG 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 339
BssMI GATC 7 cut(s) 136, 316, 445, 591, 596, 604, 814
BssSI CACGAG 1 cut(s) 477
Bst2BI CACGAG 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 2 cut(s) 436, 799
Bst6I CTCTTC 4 cut(s) 327, 467, 762, 804
BstC8I GCNNGC 3 cut(s) 219, 341, 574
BstDEI CTNAG 1 cut(s) 186
BstENI CCTNNNNNAGG 1 cut(s) 324
BstF5I GGATG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 457
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 7 cut(s) 139, 319, 448, 594, 599, 607, 817
BstMBI GATC 7 cut(s) 136, 316, 445, 591, 596, 604, 814
BstMCI CGRYCG 1 cut(s) 539
BstMWI GCNNNNNNNGC 2 cut(s) 340, 349
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 2 cut(s) 103, 538
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 4 cut(s) 110, 355, 686, 687
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 596
BstYI RGATCY 1 cut(s) 596
BsuI GTATCC 1 cut(s) 31
BsuRI GGCC 3 cut(s) 302, 366, 560
BtrI CACGTC 1 cut(s) 939
BtsCI GGATG 1 cut(s) 113
BveI ACCTGC 1 cut(s) 171
Cac8I GCNNGC 3 cut(s) 219, 341, 574
CfoI GCGC 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 558
Csp6I GTAC 2 cut(s) 7, 415
CviAII CATG 4 cut(s) 202, 380, 555, 733
CviQI GTAC 2 cut(s) 7, 415
DdeI CTNAG 1 cut(s) 186
DpnI GATC 7 cut(s) 138, 318, 447, 593, 598, 606, 816
DpnII GATC 7 cut(s) 136, 316, 445, 591, 596, 604, 814
DraI TTTAAA 1 cut(s) 634
Eam1104I CTCTTC 4 cut(s) 327, 467, 762, 804
EarI CTCTTC 4 cut(s) 327, 467, 762, 804
Eco88I CYCGRG 1 cut(s) 418
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 4 cut(s) 205, 383, 558, 736
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FatI CATG 4 cut(s) 201, 379, 554, 732
FauNDI CATATG 1 cut(s) 682
Fnu4HI GCNGC 4 cut(s) 99, 344, 676, 700
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 4 cut(s) 99, 344, 676, 700
FspBI CTAG 2 cut(s) 218, 326
GlaI GCGC 1 cut(s) 455
GluI GCNGC 4 cut(s) 99, 344, 676, 700
HaeII RGCGCY 1 cut(s) 457
HaeIII GGCC 3 cut(s) 302, 366, 560
HapII CCGG 4 cut(s) 340, 402, 539, 803
HhaI GCGC 1 cut(s) 456
Hin1II CATG 4 cut(s) 205, 383, 558, 736
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HpaII CCGG 4 cut(s) 340, 402, 539, 803
HphI GGTGA 2 cut(s) 448, 522
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 6 cut(s) 33, 125, 230, 596, 757, 763
Hpy188III TCNNGA 5 cut(s) 268, 409, 477, 803, 877
Hpy8I GTNNAC 1 cut(s) 280
Hpy99I CGWCG 1 cut(s) 375
HpyAV CCTTC 4 cut(s) 125, 232, 356, 369
HpyCH4III ACNGT 2 cut(s) 436, 799
HpyCH4IV ACGT 2 cut(s) 564, 938
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 2 cut(s) 340, 349
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 2 cut(s) 564, 938
Hsp92II CATG 4 cut(s) 205, 383, 558, 736
HspAI GCGC 1 cut(s) 454
Kpn2I TCCGGA 1 cut(s) 802
KroI GCCGGC 1 cut(s) 339
KroNI GCCGGC 1 cut(s) 341
Kzo9I GATC 7 cut(s) 136, 316, 445, 591, 596, 604, 814
Lsp1109I GCAGC 4 cut(s) 110, 355, 686, 687
LweI GCATC 2 cut(s) 78, 361
MaeI CTAG 2 cut(s) 218, 326
MaeII ACGT 2 cut(s) 564, 938
MaeIII GTNAC 3 cut(s) 64, 143, 528
MalI GATC 7 cut(s) 138, 318, 447, 593, 598, 606, 816
MboI GATC 7 cut(s) 136, 316, 445, 591, 596, 604, 814
MboII GAAGA 9 cut(s) 183, 243, 314, 454, 779, 818, 821, 844, 847
MflI RGATCY 1 cut(s) 596
MluCI AATT 7 cut(s) 284, 494, 511, 549, 580, 819, 951
MlyI GAGTC 5 cut(s) 20, 61, 248, 453, 677
MmeI TCCRAC 2 cut(s) 111, 601
MroI TCCGGA 1 cut(s) 802
MroNI GCCGGC 1 cut(s) 339
MroXI GAANNNNTTC 1 cut(s) 550
MseI TTAA 2 cut(s) 48, 633
MslI CAYNNNNRTG 2 cut(s) 106, 357
MspI CCGG 4 cut(s) 340, 402, 539, 803
MspR9I CCNGG 2 cut(s) 105, 540
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 340, 349
NaeI GCCGGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 540
NdeI CATATG 1 cut(s) 682
NdeII GATC 7 cut(s) 136, 316, 445, 591, 596, 604, 814
NgoMIV GCCGGC 1 cut(s) 339
NheI GCTAGC 1 cut(s) 217
NlaIII CATG 4 cut(s) 205, 383, 558, 736
NmuCI GTSAC 2 cut(s) 64, 528
PdiI GCCGGC 1 cut(s) 341
PdmI GAANNNNTTC 1 cut(s) 550
PfeI GAWTC 5 cut(s) 405, 503, 524, 752, 758
Pfl23II CGTACG 1 cut(s) 6
PflMI CCANNNNNTGG 1 cut(s) 213
PkrI GCNGC 4 cut(s) 100, 345, 677, 701
PleI GAGTC 5 cut(s) 19, 61, 248, 453, 676
PpsI GAGTC 5 cut(s) 19, 61, 248, 453, 676
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspLI CGTACG 1 cut(s) 6
PspPI GGNCC 1 cut(s) 558
PstI CTGCAG 1 cut(s) 100
PsuI RGATCY 1 cut(s) 596
RsaI GTAC 2 cut(s) 8, 416
RsaNI GTAC 2 cut(s) 7, 415
RseI CAYNNNNRTG 2 cut(s) 106, 357
SaqAI TTAA 2 cut(s) 48, 633
SatI GCNGC 4 cut(s) 99, 344, 676, 700
Sau3AI GATC 7 cut(s) 136, 316, 445, 591, 596, 604, 814
Sau96I GGNCC 1 cut(s) 558
SchI GAGTC 5 cut(s) 20, 61, 248, 453, 677
ScrFI CCNGG 2 cut(s) 105, 540
SetI ASST 5 cut(s) 185, 535, 567, 904, 941
SfaNI GCATC 2 cut(s) 78, 361
SfcI CTRYAG 1 cut(s) 96
SmiMI CAYNNNNRTG 2 cut(s) 106, 357
Sse9I AATT 7 cut(s) 284, 494, 511, 549, 580, 819, 951
SspMI CTAG 2 cut(s) 218, 326
StyD4I CCNGG 2 cut(s) 103, 538
TaaI ACNGT 2 cut(s) 436, 799
TaiI ACGT 2 cut(s) 567, 941
TaqI TCGA 6 cut(s) 370, 522, 535, 817, 860, 876
TasI AATT 7 cut(s) 284, 494, 511, 549, 580, 819, 951
TfiI GAWTC 5 cut(s) 405, 503, 524, 752, 758
Tru1I TTAA 2 cut(s) 48, 633
Tru9I TTAA 2 cut(s) 48, 633
TseFI GTSAC 2 cut(s) 64, 528
TseI GCWGC 4 cut(s) 98, 343, 675, 699
Tsp45I GTSAC 2 cut(s) 64, 528
TspDTI ATGAA 6 cut(s) 38, 190, 214, 543, 801, 845
TspGWI ACGGA 1 cut(s) 50
Van91I CCANNNNNTGG 1 cut(s) 213
XagI CCTNNNNNAGG 1 cut(s) 324
XapI RAATTY 3 cut(s) 284, 494, 580
XmnI GAANNNNTTC 1 cut(s) 550
XspI CTAG 2 cut(s) 218, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.