RLG00000013186

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000707
Physical Location & Seq
Reverse (-)
27208009 .. 27208467
459 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013186

Sequence Viewer

Length: 348 bp
ATGGAGTACCCCGGCCATGCCCTTACAAAGAAACTGACAAAAGCTGATGTGCAAGGTAGATTTGTAGTGCCTACTGGATGGGTCGGATCCATGCTTCCTGCACAGCCAGATCGCAACAATATTCCAATCAAAGCCTTGGACGACGAGGATCACGTTTATAAGTTCTATTTGTCTGTTCGAAGAAATGGATATCTGAAACCCGTTTTCCAGGCCAGAGAATGGAAACGCTTCATCCAAAACCGCAAAGCCGAAGTTGGCGACCAAATTTATTTCTGGTATGAGCTAGAAGCAACCCCAGCTAATGCTATCATTATGGAATACTACTACTATGTCGATCAGCCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.57

Weight (kDa)

7.89

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 159
AccB7I CCANNNNNTGG 1 cut(s) 219
AciI CCGC 1 cut(s) 241
AclWI GGATC 3 cut(s) 81, 94, 156
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 219
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 4 cut(s) 44, 283, 299, 345
AluI AGCT 4 cut(s) 44, 283, 299, 345
AlwI GGATC 3 cut(s) 81, 94, 156
AoxI GGCC 2 cut(s) 13, 210
ApoI RAATTY 1 cut(s) 264
Asp700I GAANNNNTTC 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 12
AsuII TTCGAA 1 cut(s) 178
BamHI GGATCC 1 cut(s) 86
BccI CCATC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 209
BcnI CCSGG 1 cut(s) 12
BfaI CTAG 3 cut(s) 284, 342, 346
Bme1390I CCNGG 2 cut(s) 12, 209
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 2 cut(s) 12, 209
Bpu14I TTCGAA 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 10, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 10, 135
BseGI GGATG 2 cut(s) 83, 231
BseLI CCNNNNNNNGG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 295
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 2 cut(s) 15, 212
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 219
BsnI GGCC 2 cut(s) 15, 212
Bsp119I TTCGAA 1 cut(s) 178
Bsp143I GATC 4 cut(s) 86, 109, 148, 334
BspACI CCGC 1 cut(s) 241
BspANI GGCC 2 cut(s) 15, 212
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 3 cut(s) 81, 94, 156
BspT104I TTCGAA 1 cut(s) 178
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 10, 135
BssMI GATC 4 cut(s) 86, 109, 148, 334
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 178
BstF5I GGATG 2 cut(s) 83, 231
BstKTI GATC 4 cut(s) 89, 112, 151, 337
BstMBI GATC 4 cut(s) 86, 109, 148, 334
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 10, 207
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
BsuRI GGCC 2 cut(s) 15, 212
BtsCI GGATG 2 cut(s) 83, 231
Csp6I GTAC 1 cut(s) 7
CviAII CATG 2 cut(s) 17, 91
CviQI GTAC 1 cut(s) 7
DpnI GATC 4 cut(s) 88, 111, 150, 336
DpnII GATC 4 cut(s) 86, 109, 148, 334
EaeI YGGCCR 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 135
Eco32I GATATC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 207
EcoRV GATATC 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 2 cut(s) 20, 94
FaiI YATR 6 cut(s) 18, 92, 159, 279, 314, 330
FatI CATG 2 cut(s) 16, 90
FokI GGATG 2 cut(s) 90, 218
FspBI CTAG 3 cut(s) 284, 342, 346
GsaI CCCAGC 1 cut(s) 299
HaeIII GGCC 2 cut(s) 15, 212
HapII CCGG 1 cut(s) 12
Hin1II CATG 2 cut(s) 20, 94
HpaII CCGG 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 86, 195
Hpy99I CGWCG 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 52, 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 2 cut(s) 20, 94
Kzo9I GATC 4 cut(s) 86, 109, 148, 334
LpnPI CCDG 9 cut(s) 25, 60, 111, 120, 194, 221, 226, 259, 309
MaeI CTAG 3 cut(s) 284, 342, 346
MaeII ACGT 1 cut(s) 153
MalI GATC 4 cut(s) 88, 111, 150, 336
MboI GATC 4 cut(s) 86, 109, 148, 334
MboII GAAGA 1 cut(s) 192
MflI RGATCY 1 cut(s) 86
MluCI AATT 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 1 cut(s) 139
MroXI GAANNNNTTC 1 cut(s) 227
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 2 cut(s) 12, 209
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 296
NciI CCSGG 1 cut(s) 12
NdeII GATC 4 cut(s) 86, 109, 148, 334
NlaIII CATG 2 cut(s) 20, 94
NlaIV GGNNCC 1 cut(s) 88
NspV TTCGAA 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 227
PflMI CCANNNNNTGG 1 cut(s) 219
PsiI TTATAA 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 207
PspFI CCCAGC 1 cut(s) 295
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 88
PsuI RGATCY 1 cut(s) 86
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
Sau3AI GATC 4 cut(s) 86, 109, 148, 334
ScrFI CCNGG 2 cut(s) 12, 209
SetI ASST 6 cut(s) 46, 58, 156, 285, 301, 347
SfuI TTCGAA 1 cut(s) 178
Sse9I AATT 1 cut(s) 264
SsiI CCGC 1 cut(s) 241
SspI AATATT 1 cut(s) 121
SspMI CTAG 3 cut(s) 284, 342, 346
StyD4I CCNGG 2 cut(s) 10, 207
StyI CCWWGG 1 cut(s) 135
TaiI ACGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 178, 333
TasI AATT 1 cut(s) 264
TspDTI ATGAA 1 cut(s) 220
Van91I CCANNNNNTGG 1 cut(s) 219
XapI RAATTY 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 3 cut(s) 284, 342, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.