Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Reverse (-)

3431657 .. 3432004

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG048900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCGGACGTGTCCCACTTTATAAAGTATCTGACGGATACTGATGTTAGTGACAGACTTGAAGTGACTCGTAGGATGGCTGAATTATTGACTGCAGCACCAGGTGGTGAAGTTCCAATCAAAGTGTTGGACGATCAGGGTTACTATTTTGAGTTCTTCTTGACTAGAAGAAGAGACAGATGCGGATCTGAGAAGCCATATTTCAGGCCCAGAGAGTGGCTAGCCTTCATCAGAAGACGAGAAGCCAATCAAGGCGACTCCCTCTATTTCTGGAATGAAGAGGACACATTTAGGGGTACTGAGTACCGCATCGGAGTCAAACCCCATTCTGAACCTCCACAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

13.67

Weight (kDa)

5.72

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	216
AciI	CCGC	3 cut(s)	5, 183, 307
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	342
AdeI	CACNNNGTG	1 cut(s)	104
AfaI	GTAC	2 cut(s)	298, 305
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	62
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	342
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	119
AsuNHI	GCTAGC	1 cut(s)	220
BaeI	ACNNNNGTAYC	2 cut(s)	30, 63
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	102
BciVI	GTATCC	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	2 cut(s)	165, 221
BfmI	CTRYAG	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	31
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	102
BmgBI	CACGTC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	170, 318
BmtI	GCTAGC	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	81
BseJI	GATNNNNATC	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	180, 291
BseXI	GCAGC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	133, 185
BspACI	CCGC	3 cut(s)	5, 183, 307
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	2 cut(s)	181, 292
BspMAI	CTGCAG	1 cut(s)	97
BspOI	GCTAGC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	193
BssMI	GATC	2 cut(s)	133, 185
Bst2UI	CCWGG	1 cut(s)	102
Bst6I	CTCTTC	2 cut(s)	166, 273
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	189, 300
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	2 cut(s)	136, 188
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	2 cut(s)	133, 185
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	107
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	208
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	207
CsiI	ACCWGGT	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	297, 304
CviJI	RGCY	6 cut(s)	80, 196, 208, 220, 224, 245
CviKI_1	RGCY	6 cut(s)	80, 196, 208, 220, 224, 245
CviQI	GTAC	2 cut(s)	297, 304
DdeI	CTNAG	2 cut(s)	189, 300
DpnI	GATC	2 cut(s)	135, 187
DpnII	GATC	2 cut(s)	133, 185
DraIII	CACNNNGTG	1 cut(s)	104
Eam1104I	CTCTTC	2 cut(s)	166, 273
EarI	CTCTTC	2 cut(s)	166, 273
EciI	GGCGGA	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	100
FaiI	YATR	2 cut(s)	23, 199
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	2 cut(s)	165, 221
GluI	GCNGC	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	208
HinfI	GANTC	3 cut(s)	67, 257, 315
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	5 cut(s)	33, 190, 233, 314, 331
Hpy188III	TCNNGA	2 cut(s)	160, 271
HpyAV	CCTTC	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	189, 300
HpySE526I	ACGT	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	133, 185
LpnPI	CCDG	6 cut(s)	87, 114, 122, 190, 223, 256
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	2 cut(s)	170, 318
MabI	ACCWGGT	1 cut(s)	100
MaeI	CTAG	2 cut(s)	165, 221
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	3 cut(s)	50, 64, 140
MalI	GATC	2 cut(s)	135, 187
MboI	GATC	2 cut(s)	133, 185
MboII	GAAGA	5 cut(s)	148, 180, 183, 246, 290
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	2 cut(s)	83, 342
MlyI	GAGTC	3 cut(s)	61, 251, 324
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	3 cut(s)	272, 274, 345
MspR9I	CCNGG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	102
NdeII	GATC	2 cut(s)	133, 185
NheI	GCTAGC	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	50, 64
PflMI	CCANNNNNTGG	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	3 cut(s)	61, 251, 323
PpsI	GAGTC	3 cut(s)	61, 251, 323
PsiI	TTATAA	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	2 cut(s)	298, 305
RsaNI	GTAC	2 cut(s)	297, 304
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	133, 185
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	3 cut(s)	61, 251, 324
ScrFI	CCNGG	1 cut(s)	102
SetI	ASST	3 cut(s)	12, 106, 337
SexAI	ACCWGGT	1 cut(s)	100
SfaNI	GCATC	2 cut(s)	170, 318
SfcI	CTRYAG	1 cut(s)	93
Sse9I	AATT	2 cut(s)	83, 342
SsiI	CCGC	3 cut(s)	5, 183, 307
SspMI	CTAG	2 cut(s)	165, 221
StyD4I	CCNGG	1 cut(s)	100
TaiI	ACGT	1 cut(s)	12
TasI	AATT	2 cut(s)	83, 342
TseFI	GTSAC	2 cut(s)	50, 64
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	2 cut(s)	50, 64
TspDTI	ATGAA	2 cut(s)	217, 291
TspGWI	ACGGA	1 cut(s)	50
Van91I	CCANNNNNTGG	1 cut(s)	216
XapI	RAATTY	1 cut(s)	342
XspI	CTAG	2 cut(s)	165, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.