Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Reverse (-)

3552144 .. 3552602

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG049600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGTATTTATGGATATTTACTTTTTGGCGAGAAAGTAGTGATACAATATGACTCATATCCTCCCGTAGGATTTTTTTCAGTGTTTCGTAATGTCGATCAATCTATGGAGTACGAGTACCTGAGAGGCCGTCCCAACTTTATGAAGCAGCTGACCGACTCAGATGTGAATAATAGACTTGAAGTGACTACTAAGATAGCTCGTACGATGCCTCGTGCAAAACCAGGTCGTGACACTCCGATCAGAGTCTTGGACGATCAGGGTCAGGTTTATCAGTTCAACTTGGCTGGAAGAAAAGGCAAATATCTGAAACCATATTTCAAGCCCAAAGAGTGGCTAGCCTTCATCAGAAAACGAGGAGCCAATGTTGACGACTCCATCTATTTCTGGCGAGAGGTGAACGAAATTAAGCGTACAGAATACCGCATTGACATGATCCGATTCATACATGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

18.11

Weight (kDa)

9.66

Isoelectric Point (pI)

17.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	333
AciI	CCGC	1 cut(s)	424
AclWI	GGATC	1 cut(s)	430
AfaI	GTAC	4 cut(s)	113, 119, 205, 415
AfiI	CCNNNNNNNGG	2 cut(s)	68, 333
AgsI	TTSAA	3 cut(s)	182, 280, 322
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	2 cut(s)	151, 200
AluI	AGCT	2 cut(s)	151, 200
AlwI	GGATC	1 cut(s)	430
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	409
AsuNHI	GCTAGC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	386
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	225
BfaI	CTAG	1 cut(s)	338
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	225
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	198
BmtI	GCTAGC	1 cut(s)	341
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 351, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 333
BseBI	CCWGG	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	68, 333
BseMII	CTCAG	2 cut(s)	113, 174
BseRI	GAGGAG	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	129
BsiWI	CGTACG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	68, 333
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	97, 240, 256, 435
BspACI	CCGC	1 cut(s)	424
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	2 cut(s)	114, 173
BspLI	GGNNCC	1 cut(s)	361
BspOI	GCTAGC	1 cut(s)	341
BspPI	GGATC	1 cut(s)	430
BssMI	GATC	4 cut(s)	97, 240, 256, 435
BssSI	CACGAG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	3 cut(s)	122, 160, 192
BstENI	CCTNNNNNAGG	1 cut(s)	66
BstKTI	GATC	4 cut(s)	100, 243, 259, 438
BstMBI	GATC	4 cut(s)	97, 240, 256, 435
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	339
CsiI	ACCWGGT	1 cut(s)	223
Csp6I	GTAC	4 cut(s)	112, 118, 204, 414
CviAII	CATG	2 cut(s)	433, 449
CviJI	RGCY	8 cut(s)	129, 151, 200, 287, 325, 337, 341, 362
CviKI_1	RGCY	8 cut(s)	129, 151, 200, 287, 325, 337, 341, 362
CviQI	GTAC	4 cut(s)	112, 118, 204, 414
DdeI	CTNAG	3 cut(s)	122, 160, 192
DpnI	GATC	4 cut(s)	99, 242, 258, 437
DpnII	GATC	4 cut(s)	97, 240, 256, 435
EcoNI	CCTNNNNNAGG	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	223
FaeI	CATG	2 cut(s)	436, 452
FaiI	YATR	9 cut(s)	12, 51, 58, 107, 143, 316, 434, 446, 450
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	2 cut(s)	432, 448
Fnu4HI	GCNGC	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	436, 452
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	5 cut(s)	53, 158, 246, 374, 441
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	2 cut(s)	370, 400
Hpy188I	TCNGA	6 cut(s)	163, 240, 245, 309, 350, 440
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	2 cut(s)	370, 400
HpyAV	CCTTC	1 cut(s)	352
HpyCH4V	TGCA	1 cut(s)	218
HpyF3I	CTNAG	3 cut(s)	122, 160, 192
Hsp92II	CATG	2 cut(s)	436, 452
Kzo9I	GATC	4 cut(s)	97, 240, 256, 435
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	7 cut(s)	134, 210, 237, 245, 251, 273, 373
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	198
MabI	ACCWGGT	1 cut(s)	223
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	2 cut(s)	184, 230
MalI	GATC	4 cut(s)	99, 242, 258, 437
MboI	GATC	4 cut(s)	97, 240, 256, 435
MboII	GAAGA	1 cut(s)	303
MluCI	AATT	1 cut(s)	405
MlyI	GAGTC	4 cut(s)	47, 152, 255, 368
MnlI	CCTC	5 cut(s)	72, 119, 222, 350, 388
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
NdeII	GATC	4 cut(s)	97, 240, 256, 435
NheI	GCTAGC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	436, 452
NlaIV	GGNNCC	1 cut(s)	361
NmuCI	GTSAC	2 cut(s)	184, 230
NspI	RCATGY	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	441
Pfl23II	CGTACG	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	333
PkrI	GCNGC	1 cut(s)	150
PleI	GAGTC	4 cut(s)	47, 152, 254, 368
PpsI	GAGTC	4 cut(s)	47, 152, 254, 368
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspLI	CGTACG	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	151
RsaI	GTAC	4 cut(s)	113, 119, 205, 415
RsaNI	GTAC	4 cut(s)	112, 118, 204, 414
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	4 cut(s)	97, 240, 256, 435
SchI	GAGTC	4 cut(s)	47, 152, 255, 368
ScrFI	CCNGG	1 cut(s)	225
SetI	ASST	6 cut(s)	123, 153, 202, 229, 270, 399
SexAI	ACCWGGT	1 cut(s)	223
SfaNI	GCATC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	1 cut(s)	424
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	223
TaqI	TCGA	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	170
TasI	AATT	1 cut(s)	405
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	2 cut(s)	184, 230
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	2 cut(s)	184, 230
TspDTI	ATGAA	3 cut(s)	158, 334, 433
TspRI	CASTG	1 cut(s)	87
Van91I	CCANNNNNTGG	1 cut(s)	333
XagI	CCTNNNNNAGG	1 cut(s)	66
XceI	RCATGY	1 cut(s)	452
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.