Rmu_sc0003511.1_g000021

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003511.1
Physical Location & Seq
Forward (+)
122255 .. 127348
5094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003511.1_g000021.1.cds

Sequence Viewer

Length: 1260 bp
atgtcagggctagcttgcaacgcctgtaacaaagagctcaaggacgacaccgagcagaggctccattacaagtccgaatggcaccgctacaacctcaagcgcaaggtagctggggttcctggagtgacagaagcattgtttcttgcaagacaagctgcacttgctcaggagaaaaatggtgcaaatgaaaccccaatgctctacagctgtgctctttgtggcaaagggtatagaagttccaaggctcatgctgagcatctcaaatcacgaagtcacattatgcgggcttctcaagggactggtgatgaagaagaagacaaggcaatagtcaggccacttccgagtcgtgcgaataaagctccccctaggagagaggaaattgatgaggagagtgaagaaagtggagatgagtgggaggaggttgaccctgaggatgagttggttagtgagactgcaaaatctttgactgctttaaatgtagatgggcatgcttctaatgaggatatggacgaagatgatgatgacgatgactatgaggagttggacccatcatgttgttttatgtgcgataaagagcataagaccatagagagatgcatgattcacatgcacaaacaccatggattcttcattcctgatattgagtatttgaaggacccgaaaggtcttcttacttatcttggtctcaaggttaaaagggattttatgtgtctgtactgcaatgataggtgccaacccttcaacagtatggaagcagtgaggaagcatatggtggcaaaaagccactgcaaggtacactatggagatggtggtgacgaagaagaagcagagttggatgagttctatgattacagcagcagcatctcggaatcagatgtgaatggcaaaattgcagtgactagtaagatggctcgcctgatgcctgctgcaaaacctggaagtgacactgcaatccgagtcttggacggtaagggtgacaagtatcagttctacttggctggaagaagaggcgaatataggaaaccaattttcaagcgcaaagactggagagccttcatcaaaaaccgaggagccaaagctggcaactccctctatttctggcgagaggtgaaccaaagtaagcgtacggaataccgcatcgaagtgatctcatccagaaatggtgattatcctcacccagaaggtcttggatcttccaacccgccttctgaatctcgagaagatttgaggacttgggccgcccacggtctagcactctag

Protein Analysis

419

Amino Acids

47.62

Weight (kDa)

5.6

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 81, 729
AciI CCGC 5 cut(s) 85, 283, 1135, 1202, 1239
AclWI GGATC 1 cut(s) 1198
AfaI GTAC 3 cut(s) 716, 795, 1126
AfiI CCNNNNNNNGG 3 cut(s) 57, 790, 961
AgsI TTSAA 3 cut(s) 652, 742, 1033
AhlI ACTAGT 1 cut(s) 899
AjnI CCWGG 2 cut(s) 118, 934
AluBI AGCT 7 cut(s) 14, 37, 110, 155, 207, 359, 1079
AluI AGCT 7 cut(s) 14, 37, 110, 155, 207, 359, 1079
Alw21I GWGCWC 2 cut(s) 39, 214
Alw26I GTCTC 2 cut(s) 443, 689
AlwI GGATC 1 cut(s) 1198
Ama87I CYCGRG 1 cut(s) 1215
AoxI GGCC 2 cut(s) 332, 1236
ApeKI GCWGC 4 cut(s) 155, 855, 858, 926
AspA2I CCTAGG 1 cut(s) 365
AspLEI GCGC 2 cut(s) 102, 1038
AspS9I GGNCC 3 cut(s) 544, 655, 1236
AsuHPI GGTGA 6 cut(s) 314, 824, 986, 1120, 1166, 1175
AsuNHI GCTAGC 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 1215
AvaII GGWCC 2 cut(s) 544, 655
AvrII CCTAGG 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 429
BanI GGYRCC 2 cut(s) 81, 729
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 2 cut(s) 321, 659
Bbv12I GWGCWC 2 cut(s) 39, 214
BbvI GCAGC 4 cut(s) 142, 867, 870, 913
BccI CCATC 4 cut(s) 476, 556, 800, 901
BciT130I CCWGG 2 cut(s) 120, 936
BcoDI GTCTC 2 cut(s) 443, 689
BcuI ACTAGT 1 cut(s) 899
BfaI CTAG 5 cut(s) 11, 366, 900, 1250, 1258
BfmI CTRYAG 1 cut(s) 202
BisI GCNGC 5 cut(s) 156, 856, 859, 927, 1239
BlnI CCTAGG 1 cut(s) 365
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 5 cut(s) 157, 857, 860, 928, 1240
Bme1390I CCNGG 2 cut(s) 120, 936
Bme18I GGWCC 2 cut(s) 544, 655
BmeT110I CYCGRG 1 cut(s) 1215
BmgT120I GGNCC 3 cut(s) 544, 655, 1236
BmiI GGNNCC 7 cut(s) 62, 83, 117, 546, 657, 731, 1072
BmrFI CCNGG 2 cut(s) 120, 936
BmsI GCATC 5 cut(s) 265, 584, 870, 909, 1146
BmtI GCTAGC 1 cut(s) 14
BpiI GAAGAC 2 cut(s) 321, 659
BpmI CTGGAG 2 cut(s) 141, 1066
Bpu10I CCTNAGC 1 cut(s) 165
Bpu1102I GCTNAGC 1 cut(s) 252
BpuEI CTTGAG 4 cut(s) 23, 80, 276, 671
BsaI GGTCTC 1 cut(s) 689
BsaJI CCNNGG 5 cut(s) 240, 365, 619, 1066, 1243
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 790, 961
Bse1I ACTGG 2 cut(s) 304, 1049
Bse21I CCTNAGG 1 cut(s) 429
Bse3DI GCAATG 1 cut(s) 727
BseBI CCWGG 2 cut(s) 120, 936
BseDI CCNNGG 5 cut(s) 240, 365, 619, 1066, 1243
BseGI GGATG 3 cut(s) 439, 841, 1151
BseLI CCNNNNNNNGG 3 cut(s) 57, 790, 961
BseMI GCAATG 1 cut(s) 727
BseMII CTCAG 3 cut(s) 179, 243, 420
BseNI ACTGG 2 cut(s) 304, 1049
BseRI GAGGAG 4 cut(s) 401, 431, 551, 1083
BseXI GCAGC 4 cut(s) 142, 867, 870, 913
BseYI CCCAGC 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 141
BshFI GGCC 2 cut(s) 334, 1238
BshNI GGYRCC 2 cut(s) 81, 729
BsiHKAI GWGCWC 2 cut(s) 39, 214
BsiHKCI CYCGRG 1 cut(s) 1215
BsiWI CGTACG 1 cut(s) 1124
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 3 cut(s) 57, 790, 961
BsmAI GTCTC 2 cut(s) 443, 689
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 2 cut(s) 334, 1238
Bso31I GGTCTC 1 cut(s) 689
BsoBI CYCGRG 1 cut(s) 1215
Bsp1286I GDGCHC 2 cut(s) 39, 214
Bsp143I GATC 2 cut(s) 1146, 1190
Bsp1720I GCTNAGC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 619
BspACI CCGC 5 cut(s) 85, 283, 1135, 1202, 1239
BspANI GGCC 2 cut(s) 334, 1238
BspCNI CTCAG 3 cut(s) 178, 244, 421
BspLI GGNNCC 7 cut(s) 62, 83, 117, 546, 657, 731, 1072
BspOI GCTAGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 1198
BspT107I GGYRCC 2 cut(s) 81, 729
BspTNI GGTCTC 1 cut(s) 689
BsrDI GCAATG 1 cut(s) 727
BsrI ACTGG 2 cut(s) 304, 1049
BssECI CCNNGG 5 cut(s) 240, 365, 619, 1066, 1243
BssMI GATC 2 cut(s) 1146, 1190
BssT1I CCWWGG 3 cut(s) 240, 365, 619
Bst2UI CCWGG 2 cut(s) 120, 936
Bst4CI ACNGT 3 cut(s) 746, 968, 1247
Bst6I CTCTTC 1 cut(s) 1000
BstC8I GCNNGC 7 cut(s) 12, 16, 285, 489, 913, 924, 1081
BstDEI CTNAG 3 cut(s) 165, 252, 429
BstDSI CCRYGG 2 cut(s) 619, 1243
BstF5I GGATG 3 cut(s) 439, 841, 1151
BstHHI GCGC 2 cut(s) 102, 1038
BstKTI GATC 2 cut(s) 1149, 1193
BstMAI GTCTC 2 cut(s) 443, 689
BstMBI GATC 2 cut(s) 1146, 1190
BstMWI GCNNNNNNNGC 4 cut(s) 20, 152, 161, 356
BstNI CCWGG 2 cut(s) 120, 936
BstNSI RCATGY 2 cut(s) 491, 610
BstSCI CCNGG 2 cut(s) 118, 934
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 4 cut(s) 142, 867, 870, 913
BstV2I GAAGAC 2 cut(s) 321, 659
BstX2I RGATCY 1 cut(s) 1190
BstYI RGATCY 1 cut(s) 1190
Bsu36I CCTNAGG 1 cut(s) 429
BsuRI GGCC 2 cut(s) 334, 1238
BtgI CCRYGG 2 cut(s) 619, 1243
BtsCI GGATG 3 cut(s) 439, 841, 1151
BtsI GCAGTG 4 cut(s) 762, 784, 900, 945
BtsIMutI CAGTG 4 cut(s) 762, 784, 900, 945
Cac8I GCNNGC 7 cut(s) 12, 16, 285, 489, 913, 924, 1081
CfoI GCGC 2 cut(s) 102, 1038
Cfr13I GGNCC 3 cut(s) 544, 655, 1236
Csp6I GTAC 3 cut(s) 715, 794, 1125
CviAII CATG 6 cut(s) 248, 488, 552, 598, 607, 620
CviQI GTAC 3 cut(s) 715, 794, 1125
DdeI CTNAG 3 cut(s) 165, 252, 429
DpnI GATC 2 cut(s) 1148, 1192
DpnII GATC 2 cut(s) 1146, 1190
DraI TTTAAA 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 1000
EarI CTCTTC 1 cut(s) 1000
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 3 cut(s) 240, 365, 619
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 689
Eco47I GGWCC 2 cut(s) 544, 655
Eco53kI GAGCTC 1 cut(s) 37
Eco81I CCTNAGG 1 cut(s) 429
Eco88I CYCGRG 1 cut(s) 1215
EcoICRI GAGCTC 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 655
EcoRII CCWGG 2 cut(s) 118, 934
EcoT14I CCWWGG 3 cut(s) 240, 365, 619
EcoT22I ATGCAT 1 cut(s) 599
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 3 cut(s) 240, 365, 619
FaeI CATG 6 cut(s) 251, 491, 555, 601, 610, 623
FalI AAGNNNNNCTT 4 cut(s) 144, 176, 654, 686
FaqI GGGAC 1 cut(s) 310
FatI CATG 6 cut(s) 247, 487, 551, 597, 606, 619
FauI CCCGC 2 cut(s) 276, 1209
FauNDI CATATG 1 cut(s) 768
Fnu4HI GCNGC 5 cut(s) 156, 856, 859, 927, 1239
FokI GGATG 3 cut(s) 446, 848, 1138
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 5 cut(s) 156, 856, 859, 927, 1239
FspBI CTAG 5 cut(s) 11, 366, 900, 1250, 1258
GlaI GCGC 2 cut(s) 101, 1037
GluI GCNGC 5 cut(s) 156, 856, 859, 927, 1239
GsaI CCCAGC 1 cut(s) 114
GsuI CTGGAG 2 cut(s) 141, 1066
HaeIII GGCC 2 cut(s) 334, 1238
HhaI GCGC 2 cut(s) 102, 1038
Hin1II CATG 6 cut(s) 251, 491, 555, 601, 610, 623
Hin6I GCGC 2 cut(s) 100, 1036
HinP1I GCGC 2 cut(s) 100, 1036
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 6 cut(s) 343, 601, 624, 869, 957, 1211
HphI GGTGA 6 cut(s) 314, 824, 986, 1120, 1166, 1175
Hpy166II GTNNAC 3 cut(s) 424, 796, 1111
Hpy188I TCNGA 6 cut(s) 76, 342, 868, 874, 956, 1210
Hpy188III TCNNGA 6 cut(s) 167, 267, 635, 1155, 1215, 1217
Hpy8I GTNNAC 3 cut(s) 424, 796, 1111
HpyAV CCTTC 5 cut(s) 646, 748, 1063, 1175, 1215
HpyCH4III ACNGT 3 cut(s) 746, 968, 1247
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 152, 161, 356
HpyF3I CTNAG 3 cut(s) 165, 252, 429
Hsp92II CATG 6 cut(s) 251, 491, 555, 601, 610, 623
HspAI GCGC 2 cut(s) 100, 1036
Kzo9I GATC 2 cut(s) 1146, 1190
LmnI GCTCC 3 cut(s) 66, 364, 1070
Lsp1109I GCAGC 4 cut(s) 142, 867, 870, 913
LweI GCATC 5 cut(s) 265, 584, 870, 909, 1146
MaeI CTAG 5 cut(s) 11, 366, 900, 1250, 1258
MaeIII GTNAC 7 cut(s) 26, 124, 272, 812, 895, 941, 974
MalI GATC 2 cut(s) 1148, 1192
MboI GATC 2 cut(s) 1146, 1190
MflI RGATCY 1 cut(s) 1190
MhlI GDGCHC 2 cut(s) 39, 214
MluCI AATT 3 cut(s) 378, 888, 1026
MlyI GAGTC 2 cut(s) 352, 966
MmeI TCCRAC 3 cut(s) 522, 813, 1221
Mph1103I ATGCAT 1 cut(s) 599
MseI TTAA 2 cut(s) 473, 693
MslI CAYNNNNRTG 1 cut(s) 1142
MspA1I CMGCKG 1 cut(s) 207
MspR9I CCNGG 2 cut(s) 120, 936
MvaI CCWGG 2 cut(s) 120, 936
MwoI GCNNNNNNNGC 4 cut(s) 20, 152, 161, 356
NcoI CCATGG 1 cut(s) 619
NdeI CATATG 1 cut(s) 768
NdeII GATC 2 cut(s) 1146, 1190
NheI GCTAGC 1 cut(s) 10
NlaIII CATG 6 cut(s) 251, 491, 555, 601, 610, 623
NlaIV GGNNCC 7 cut(s) 62, 83, 117, 546, 657, 731, 1072
NmuCI GTSAC 6 cut(s) 124, 272, 812, 895, 941, 974
NsiI ATGCAT 1 cut(s) 599
NspI RCATGY 2 cut(s) 491, 610
PaeI GCATGC 1 cut(s) 491
PaeR7I CTCGAG 1 cut(s) 1215
PfeI GAWTC 4 cut(s) 601, 624, 869, 1211
Pfl23II CGTACG 1 cut(s) 1124
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 5 cut(s) 157, 857, 860, 928, 1240
PleI GAGTC 2 cut(s) 351, 965
PpsI GAGTC 2 cut(s) 351, 965
PpuMI RGGWCCY 1 cut(s) 655
Psp124BI GAGCTC 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 655
Psp6I CCWGG 2 cut(s) 118, 934
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 2 cut(s) 118, 934
PspLI CGTACG 1 cut(s) 1124
PspN4I GGNNCC 7 cut(s) 62, 83, 117, 546, 657, 731, 1072
PspPI GGNCC 3 cut(s) 544, 655, 1236
PspPPI RGGWCCY 1 cut(s) 655
PsrI GAACNNNNNNTAC 2 cut(s) 99, 131
PsuI RGATCY 1 cut(s) 1190
PvuII CAGCTG 1 cut(s) 207
RsaI GTAC 3 cut(s) 716, 795, 1126
RsaNI GTAC 3 cut(s) 715, 794, 1125
RseI CAYNNNNRTG 1 cut(s) 1142
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 2 cut(s) 473, 693
SatI GCNGC 5 cut(s) 156, 856, 859, 927, 1239
Sau3AI GATC 2 cut(s) 1146, 1190
Sau96I GGNCC 3 cut(s) 544, 655, 1236
SchI GAGTC 2 cut(s) 352, 966
ScrFI CCNGG 2 cut(s) 120, 936
SduI GDGCHC 2 cut(s) 39, 214
SfaNI GCATC 5 cut(s) 265, 584, 870, 909, 1146
SfcI CTRYAG 1 cut(s) 202
Sfr274I CTCGAG 1 cut(s) 1215
SinI GGWCC 2 cut(s) 544, 655
SlaI CTCGAG 1 cut(s) 1215
SmiMI CAYNNNNRTG 1 cut(s) 1142
SmlI CTYRAG 5 cut(s) 38, 95, 291, 686, 1215
SmoI CTYRAG 5 cut(s) 38, 95, 291, 686, 1215
SpeI ACTAGT 1 cut(s) 899
SphI GCATGC 1 cut(s) 491
Sse9I AATT 3 cut(s) 378, 888, 1026
SsiI CCGC 5 cut(s) 85, 283, 1135, 1202, 1239
SspMI CTAG 5 cut(s) 11, 366, 900, 1250, 1258
SstI GAGCTC 1 cut(s) 39
StyD4I CCNGG 2 cut(s) 118, 934
StyI CCWWGG 3 cut(s) 240, 365, 619
TaaI ACNGT 3 cut(s) 746, 968, 1247
TaqI TCGA 2 cut(s) 1140, 1216
TasI AATT 3 cut(s) 378, 888, 1026
TatI WGTACW 1 cut(s) 714
TauI GCSGC 1 cut(s) 1241
TfiI GAWTC 4 cut(s) 601, 624, 869, 1211
Tru1I TTAA 2 cut(s) 473, 693
Tru9I TTAA 2 cut(s) 473, 693
TscAI CASTG 4 cut(s) 762, 791, 900, 952
TseFI GTSAC 6 cut(s) 124, 272, 812, 895, 941, 974
TseI GCWGC 4 cut(s) 155, 855, 858, 926
Tsp45I GTSAC 6 cut(s) 124, 272, 812, 895, 941, 974
TspDTI ATGAA 4 cut(s) 201, 321, 619, 1045
TspGWI ACGGA 1 cut(s) 1142
TspRI CASTG 4 cut(s) 762, 791, 900, 952
VpaK11BI GGWCC 2 cut(s) 544, 655
XceI RCATGY 2 cut(s) 491, 610
XhoI CTCGAG 1 cut(s) 1215
XmaJI CCTAGG 1 cut(s) 365
XspI CTAG 5 cut(s) 11, 366, 900, 1250, 1258
Zsp2I ATGCAT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.