Rh7CG048200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000707
Physical Location & Seq
Reverse (-)
3319360 .. 3319770
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG048200.1

Sequence Viewer

Length: 411 bp
ATGGAGCTCGAGTACCTGAGAGGCCGTCCAAAGTTTGTGAAAAAGCTGACGCAAACAGATGTGGATGACAGACTTGTAGTGACTAAGGAGATGGGTCTCATGATGCCTGATGCAGATCCAGAACATGACACTTTGAGAGTGTTGGACGATGAGGGTGACGACTATCAGTTCTACTTGTCTGTAAGAAAGGGCCGAAATCTCAAACCAGTTTTCCAGGCCCAAGGATGGAAAACATTCATCACAAAACGAGGAGCCAAAGTTGGCGACTTCATCTGTTTCAGGCCAGAGGTGAATGCAATTAAGTGTACAGATTACCGCATCAAGTTATTCCCATTCACATGTTATCTTTCCCCCAACCCAGAAGGTCTTTCATCTTCCAAGCCATCTGCATCTGCAGATGAACATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.58

Weight (kDa)

6.73

Isoelectric Point (pI)

26.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 12 - 110 7.4e-08 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 316
AclWI GGATC 1 cut(s) 110
AfaI GTAC 2 cut(s) 14, 307
AfiI CCNNNNNNNGG 1 cut(s) 225
AflIII ACRYGT 1 cut(s) 338
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 2 cut(s) 7, 46
AluI AGCT 2 cut(s) 7, 46
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 8
AoxI GGCC 4 cut(s) 22, 190, 216, 281
Asp700I GAANNNNTTC 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 190, 217
AsuHPI GGTGA 2 cut(s) 167, 301
AvaI CYCGRG 1 cut(s) 8
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 9
BccI CCATC 3 cut(s) 85, 219, 391
BceAI ACGGC 1 cut(s) 9
BciT130I CCWGG 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 393
Bme1390I CCNGG 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 190, 217
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 4 cut(s) 93, 100, 327, 398
BsaBI GATNNNNATC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 220
BsaXI ACNNNNNCTCC 3 cut(s) 26, 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 2 cut(s) 70, 230
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 8
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 264
BshFI GGCC 4 cut(s) 24, 192, 218, 283
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 4 cut(s) 24, 192, 218, 283
Bso31I GGTCTC 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 9
Bsp1407I TGTACA 1 cut(s) 305
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 1 cut(s) 316
BspANI GGCC 4 cut(s) 24, 192, 218, 283
BspCNI CTCAG 1 cut(s) 9
BspHI TCATGA 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 253
BspMAI CTGCAG 1 cut(s) 397
BspPI GGATC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 101
BsrGI TGTACA 1 cut(s) 305
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 215
BstAUI TGTACA 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 17, 84
BstF5I GGATG 2 cut(s) 70, 230
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 2 cut(s) 342, 407
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 4 cut(s) 24, 192, 218, 283
BtsCI GGATG 2 cut(s) 70, 230
CciI TCATGA 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 190, 217
CseI GACGC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 13, 306
CviAII CATG 5 cut(s) 100, 125, 339, 404, 408
CviJI RGCY 8 cut(s) 7, 24, 46, 192, 218, 254, 283, 382
CviKI_1 RGCY 8 cut(s) 7, 24, 46, 192, 218, 254, 283, 382
CviQI GTAC 2 cut(s) 13, 306
DdeI CTNAG 2 cut(s) 17, 84
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 101
Eco53kI GAGCTC 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 5 cut(s) 103, 128, 342, 407, 411
FaiI YATR 5 cut(s) 101, 126, 340, 405, 409
FatI CATG 5 cut(s) 99, 124, 338, 403, 407
FokI GGATG 2 cut(s) 77, 237
FriOI GRGCYC 1 cut(s) 9
HaeIII GGCC 4 cut(s) 24, 192, 218, 283
HgaI GACGC 1 cut(s) 58
Hin1II CATG 5 cut(s) 103, 128, 342, 407, 411
HphI GGTGA 2 cut(s) 167, 301
Hpy166II GTNNAC 1 cut(s) 306
Hpy188III TCNNGA 2 cut(s) 100, 119
Hpy8I GTNNAC 1 cut(s) 306
HpyAV CCTTC 1 cut(s) 356
HpyCH4V TGCA 5 cut(s) 113, 296, 389, 395, 407
HpyF3I CTNAG 2 cut(s) 17, 84
Hsp92II CATG 5 cut(s) 103, 128, 342, 407, 411
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 2 cut(s) 4, 251
LpnPI CCDG 9 cut(s) 29, 120, 132, 200, 219, 227, 265, 297, 372
LweI GCATC 4 cut(s) 93, 100, 327, 398
MaeIII GTNAC 2 cut(s) 79, 155
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 1 cut(s) 366
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 4 cut(s) 14, 145, 242, 280
Mph1103I ATGCAT 1 cut(s) 409
MroXI GAANNNNTTC 1 cut(s) 233
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 337
MspR9I CCNGG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 1 cut(s) 215
NdeII GATC 1 cut(s) 115
NlaIII CATG 5 cut(s) 103, 128, 342, 407, 411
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 2 cut(s) 79, 155
NsiI ATGCAT 1 cut(s) 409
NspI RCATGY 2 cut(s) 342, 407
PaeR7I CTCGAG 1 cut(s) 8
PagI TCATGA 1 cut(s) 99
PciI ACATGT 1 cut(s) 338
PctI GAATGC 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 233
PscI ACATGT 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 2 cut(s) 190, 217
PspXI VCTCGAGB 1 cut(s) 8
PstI CTGCAG 1 cut(s) 397
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 2 cut(s) 14, 307
RsaNI GTAC 2 cut(s) 13, 306
RseI CAYNNNNRTG 1 cut(s) 337
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 300
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 2 cut(s) 190, 217
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 1 cut(s) 9
SetI ASST 5 cut(s) 9, 18, 48, 291, 367
SfaNI GCATC 4 cut(s) 93, 100, 327, 398
SfcI CTRYAG 1 cut(s) 393
Sfr274I CTCGAG 1 cut(s) 8
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 337
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 1 cut(s) 297
SsiI CCGC 1 cut(s) 316
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 220
TaqI TCGA 1 cut(s) 9
TasI AATT 1 cut(s) 297
TatI WGTACW 1 cut(s) 305
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseFI GTSAC 2 cut(s) 79, 155
Tsp45I GTSAC 2 cut(s) 79, 155
TspDTI ATGAA 3 cut(s) 226, 259, 360
XceI RCATGY 2 cut(s) 342, 407
XhoI CTCGAG 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 233
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.