Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Forward (+)

46787177 .. 46787533

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G574400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCGGCCCGCTATGAGAAATGCCTTACAGAAACAGATGTAGGGAGCAGATTTGCCCTTCCGATTTCCTGGCTTAGTGTGCTGCCTCCAATTGAACAAGGAAGCCATGAGTTCCATTTGCAGGTTACAGACGGGTTCGGGTTTTTTTGGGAATTTTGCTGCTCCATTCGAAGGGTGGGACGGTACCGGAAGCCGGTTTTTCAGTCTGAGGGATGGCTCAAGTTTGTCAACCACAAAGGGCTCAAAGTTGGGGACAAGATCGTTCTTGATTCAGAGGCCAACGATTTCAGAGGAACCCAATTCAGAATTAGAGCACAGAAGTTGAACAAAGAGTGTGATCAGTGGCTTGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

119

Amino Acids

13.76

Weight (kDa)

8.4

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	112
Acc65I	GGTACC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	183
AciI	CCGC	2 cut(s)	5, 10
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	3 cut(s)	121, 171, 193
AgsI	TTSAA	2 cut(s)	95, 325
AjnI	CCWGG	1 cut(s)	68
Alw21I	GWGCWC	1 cut(s)	316
AoxI	GGCC	2 cut(s)	6, 276
ApeKI	GCWGC	2 cut(s)	82, 159
ApoI	RAATTY	1 cut(s)	152
Asp718I	GGTACC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	7
AsuII	TTCGAA	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	2 cut(s)	69, 146
BccI	CCATC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	70
BclI	TGATCA	1 cut(s)	337
BfuAI	ACCTGC	1 cut(s)	112
BisI	GCNGC	3 cut(s)	6, 83, 160
BlsI	GCNGC	3 cut(s)	7, 84, 161
Bme1390I	CCNGG	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	185, 295
BmrFI	CCNGG	1 cut(s)	70
Bpu14I	TTCGAA	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 171, 193
Bse118I	RCCGGY	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	3 cut(s)	121, 171, 193
BseMII	CTCAG	1 cut(s)	198
BseXI	GCAGC	2 cut(s)	69, 146
BshFI	GGCC	2 cut(s)	8, 278
BshNI	GGYRCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	2 cut(s)	187, 194
BslFI	GGGAC	2 cut(s)	192, 266
BslI	CCNNNNNNNGG	3 cut(s)	121, 171, 193
BsmFI	GGGAC	2 cut(s)	192, 266
BsnI	GGCC	2 cut(s)	8, 278
Bsp119I	TTCGAA	1 cut(s)	169
Bsp1286I	GDGCHC	2 cut(s)	243, 316
Bsp143I	GATC	2 cut(s)	258, 337
BspACI	CCGC	2 cut(s)	5, 10
BspANI	GGCC	2 cut(s)	8, 278
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	185, 295
BspMI	ACCTGC	1 cut(s)	112
BspT104I	TTCGAA	1 cut(s)	169
BspT107I	GGYRCC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	193
BssMI	GATC	2 cut(s)	258, 337
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	183
BstBI	TTCGAA	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	2 cut(s)	74, 207
BstF5I	GGATG	1 cut(s)	218
BstKTI	GATC	2 cut(s)	261, 340
BstMBI	GATC	2 cut(s)	258, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	69, 146
BsuRI	GGCC	2 cut(s)	8, 278
BtsCI	GGATG	1 cut(s)	218
BtsIMutI	CAGTG	1 cut(s)	347
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	8 cut(s)	8, 73, 105, 193, 217, 241, 278, 346
CviKI_1	RGCY	8 cut(s)	8, 73, 105, 193, 217, 241, 278, 346
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	74, 207
DpnI	GATC	2 cut(s)	260, 339
DpnII	GATC	2 cut(s)	258, 337
Eco24I	GRGCYC	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	243
FaeI	CATG	1 cut(s)	110
FaiI	YATR	2 cut(s)	15, 108
FaqI	GGGAC	2 cut(s)	192, 266
FatI	CATG	1 cut(s)	106
FauI	CCCGC	1 cut(s)	17
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	3 cut(s)	6, 83, 160
FokI	GGATG	1 cut(s)	225
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	3 cut(s)	6, 83, 160
GluI	GCNGC	3 cut(s)	6, 83, 160
HaeIII	GGCC	2 cut(s)	8, 278
HapII	CCGG	2 cut(s)	187, 194
Hin1II	CATG	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	2 cut(s)	187, 194
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	5 cut(s)	63, 208, 274, 290, 305
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	68, 165
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	2 cut(s)	74, 207
Hsp92II	CATG	1 cut(s)	110
KpnI	GGTACC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	258, 337
LmnI	GCTCC	2 cut(s)	45, 167
LpnPI	CCDG	5 cut(s)	55, 82, 107, 200, 207
Lsp1109I	GCAGC	2 cut(s)	69, 146
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	260, 339
MboI	GATC	2 cut(s)	258, 337
MfeI	CAATTG	1 cut(s)	90
MhlI	GDGCHC	2 cut(s)	243, 316
MluCI	AATT	4 cut(s)	90, 152, 299, 306
MnlI	CCTC	4 cut(s)	96, 202, 268, 284
MspI	CCGG	2 cut(s)	187, 194
MspR9I	CCNGG	1 cut(s)	70
MunI	CAATTG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	79
NdeII	GATC	2 cut(s)	258, 337
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	2 cut(s)	185, 295
NspV	TTCGAA	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	7, 84, 161
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	185, 295
PspPI	GGNCC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SatI	GCNGC	3 cut(s)	6, 83, 160
Sau3AI	GATC	2 cut(s)	258, 337
Sau96I	GGNCC	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	2 cut(s)	243, 316
SetI	ASST	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	4 cut(s)	90, 152, 299, 306
SsiI	CCGC	2 cut(s)	5, 10
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	183
TaqI	TCGA	1 cut(s)	169
TasI	AATT	4 cut(s)	90, 152, 299, 306
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	269
TscAI	CASTG	1 cut(s)	347
TseI	GCWGC	2 cut(s)	82, 159
TspRI	CASTG	1 cut(s)	347
XapI	RAATTY	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.