Prupe.8G118800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000707
Physical Location & Seq
Reverse (-)
14595104 .. 14596037
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G118800.1

Sequence Viewer

Length: 363 bp
ATGGAGCTTGCACACGGTGTGAAGAAAGTCATCACGGCCACCGATGTTGGGAGACTTGTAGTGACCAGAAAAATTCTTGCTGTGCTGCCTCCTGTCAATCCAGGTAATGCTATCTCAATCAACGTTTTCGATAGCCTAACAGATCGGGTTTACGTGTTCCAGTTAGCTGGTAGGCGCGGCAGATACCTGAAGCCAGTTCTCCAGTCTCGAGGATGGAAACGCTTTGTCAACGACAAAGGCATTGCGGTTGGGGACGTCGTCTGGTTCTGGGAGGAGGAAAACCCAACTTATCAAACACAATACCGAATTACAGTGTTCAAACCAAATCTTTTTCCTGGCCACCCAGATCTTCATGGTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.6

Weight (kDa)

9.91

Isoelectric Point (pI)

24.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 258
AccII CGCG 1 cut(s) 177
AciI CCGC 2 cut(s) 177, 245
AclI AACGTT 1 cut(s) 123
AcoI YGGCCR 2 cut(s) 36, 337
AcsI RAATTY 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 255
AdeI CACNNNGTG 2 cut(s) 17, 19
AfiI CCNNNNNNNGG 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 1 cut(s) 319
AjnI CCWGG 2 cut(s) 100, 334
AluBI AGCT 2 cut(s) 7, 167
AluI AGCT 2 cut(s) 7, 167
Alw26I GTCTC 2 cut(s) 46, 210
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 2 cut(s) 36, 337
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 1 cut(s) 72
AspLEI GCGC 1 cut(s) 177
AvaI CYCGRG 1 cut(s) 207
BalI TGGCCA 1 cut(s) 339
BbvI GCAGC 1 cut(s) 72
BccI CCATC 1 cut(s) 207
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 2 cut(s) 102, 336
BcoDI GTCTC 2 cut(s) 46, 210
BfaI CTAG 1 cut(s) 361
BglII AGATCT 1 cut(s) 346
BisI GCNGC 2 cut(s) 86, 178
BlsI GCNGC 2 cut(s) 87, 179
Bme1390I CCNGG 2 cut(s) 102, 336
BmeT110I CYCGRG 1 cut(s) 207
BmrFI CCNGG 2 cut(s) 102, 336
BpmI CTGGAG 1 cut(s) 185
BsaAI YACGTR 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 3 cut(s) 160, 194, 202
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 2 cut(s) 102, 336
BseGI GGATG 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 240
BseNI ACTGG 3 cut(s) 160, 194, 202
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 38, 339
BsiHKCI CYCGRG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 2 cut(s) 46, 210
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 2 cut(s) 38, 339
BsoBI CYCGRG 1 cut(s) 207
Bsp143I GATC 2 cut(s) 142, 346
BspACI CCGC 2 cut(s) 177, 245
BspANI GGCC 2 cut(s) 38, 339
BspFNI CGCG 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 3 cut(s) 160, 194, 202
BssMI GATC 2 cut(s) 142, 346
BssNI GRCGYC 1 cut(s) 255
Bst2UI CCWGG 2 cut(s) 102, 336
Bst4CI ACNGT 2 cut(s) 17, 313
BstACI GRCGYC 1 cut(s) 255
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 9
BstF5I GGATG 1 cut(s) 218
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 2 cut(s) 145, 349
BstMAI GTCTC 2 cut(s) 46, 210
BstMBI GATC 2 cut(s) 142, 346
BstNI CCWGG 2 cut(s) 102, 336
BstSCI CCNGG 2 cut(s) 100, 334
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 167
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 2 cut(s) 38, 339
BtsCI GGATG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 1 cut(s) 177
CspCI CAANNNNNGTGG 2 cut(s) 28, 63
CviAII CATG 1 cut(s) 353
CviJI RGCY 6 cut(s) 7, 38, 135, 167, 193, 339
CviKI_1 RGCY 6 cut(s) 7, 38, 135, 167, 193, 339
DpnI GATC 2 cut(s) 144, 348
DpnII GATC 2 cut(s) 142, 346
DraIII CACNNNGTG 2 cut(s) 17, 19
EaeI YGGCCR 2 cut(s) 36, 337
Eco57I CTGAAG 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 207
EcoRII CCWGG 2 cut(s) 100, 334
FaeI CATG 1 cut(s) 356
FaiI YATR 1 cut(s) 354
FaqI GGGAC 1 cut(s) 266
FatI CATG 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 86, 178
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 2 cut(s) 86, 178
FspBI CTAG 1 cut(s) 361
GlaI GCGC 1 cut(s) 176
GluI GCNGC 2 cut(s) 86, 178
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 2 cut(s) 38, 339
HhaI GCGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 1 cut(s) 356
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
Hpy166II GTNNAC 2 cut(s) 151, 229
Hpy188III TCNNGA 1 cut(s) 207
Hpy8I GTNNAC 2 cut(s) 151, 229
Hpy99I CGWCG 1 cut(s) 260
HpyCH4III ACNGT 2 cut(s) 17, 313
HpyCH4IV ACGT 3 cut(s) 123, 153, 255
HpyCH4V TGCA 1 cut(s) 11
HpySE526I ACGT 3 cut(s) 123, 153, 255
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 1 cut(s) 356
HspAI GCGC 1 cut(s) 175
Kzo9I GATC 2 cut(s) 142, 346
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 72
MaeI CTAG 1 cut(s) 361
MaeII ACGT 3 cut(s) 123, 153, 255
MaeIII GTNAC 1 cut(s) 61
MalI GATC 2 cut(s) 144, 348
MboI GATC 2 cut(s) 142, 346
MboII GAAGA 2 cut(s) 34, 341
MflI RGATCY 1 cut(s) 346
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 2 cut(s) 72, 306
MluNI TGGCCA 1 cut(s) 339
MnlI CCTC 4 cut(s) 99, 203, 265, 268
Mox20I TGGCCA 1 cut(s) 339
MscI TGGCCA 1 cut(s) 339
Msp20I TGGCCA 1 cut(s) 339
MspR9I CCNGG 2 cut(s) 102, 336
MvaI CCWGG 2 cut(s) 102, 336
MvnI CGCG 1 cut(s) 177
NdeII GATC 2 cut(s) 142, 346
NlaIII CATG 1 cut(s) 356
NmuCI GTSAC 1 cut(s) 61
PaeR7I CTCGAG 1 cut(s) 207
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 87, 179
Ppu21I YACGTR 1 cut(s) 154
Psp1406I AACGTT 1 cut(s) 123
Psp6I CCWGG 2 cut(s) 100, 334
PspGI CCWGG 2 cut(s) 100, 334
PsuI RGATCY 1 cut(s) 346
PsyI GACNNNGTC 1 cut(s) 257
SatI GCNGC 2 cut(s) 86, 178
Sau3AI GATC 2 cut(s) 142, 346
ScrFI CCNGG 2 cut(s) 102, 336
SetI ASST 7 cut(s) 9, 106, 126, 156, 169, 189, 258
Sfr274I CTCGAG 1 cut(s) 207
SlaI CTCGAG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
Sse9I AATT 2 cut(s) 72, 306
SsiI CCGC 2 cut(s) 177, 245
SspMI CTAG 1 cut(s) 361
StyD4I CCNGG 2 cut(s) 100, 334
TaaI ACNGT 2 cut(s) 17, 313
TaiI ACGT 3 cut(s) 126, 156, 258
TaqI TCGA 2 cut(s) 129, 208
TasI AATT 2 cut(s) 72, 306
TauI GCSGC 1 cut(s) 180
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 341
TspRI CASTG 1 cut(s) 318
Tth111I GACNNNGTC 1 cut(s) 257
XapI RAATTY 1 cut(s) 72
XhoI CTCGAG 1 cut(s) 207
XspI CTAG 1 cut(s) 361
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.