Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000707

Physical Location & Seq

Genomic Coordinates Reverse (-)

14534427 .. 14534789

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G118400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAGCTTGCACACGGTGTGCAGAAAGTGATCACGGCCACCGATGTTGGGAGACTTGCAGTGACCAGAAAAATTCTTGCTGTGCTGCCTCCTGTCAATCCAGGTAATGCTATCTCAATCAACGTTTTCGATAGCCAAACAGATCGGGTTTACGTGTTCAAGTTAGCTGGTAGGGGCGGCAGATACCTGAAGCCAGTTCTCCAGTCTCGAGGATGGAAACGCTTTGTCAACGACAGAGGCATTGCTGTTGGGGACGTCGTCTGCTTCTGGGAGGAGGAAAACCCAACTTATCAAACACACTACCGAATTGCACTGTTCAAACCACATCTTTTTCCCTGCCACCCAGATCTTCATGGTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.5

Weight (kDa)

9.51

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14541
prunus_persica	Prupe.1G574200_v2.0.a1 Prupe.1G574300_v2.0.a1 Prupe.1G574400_v2.0.a1 Prupe.8G118100_v2.0.a1 Prupe.8G118300_v2.0.a1 Prupe.8G118400_v2.0.a1 Prupe.8G118800_v2.0.a1 Prupe.8G119000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0182081
rosa_laevigata	RLG00000005120 RLG00000005152 RLG00000005154 RLG00000005157 RLG00000005159 RLG00000013186 RLG00000026144
rosa_multiflora	Rmu_sc0000309.1_g000040 Rmu_sc0002080.1_g000054 Rmu_sc0003511.1_g000009 Rmu_sc0003511.1_g000010 Rmu_sc0003511.1_g000018 Rmu_sc0003511.1_g000021 Rmu_sc0003511.1_g000022 Rmu_sc0005498.1_g000008 Rmu_sc0006047.1_g000008 Rmu_sc0022452.1_g000004 Rmu_sc0030974.1_g000001 Rmu_ssc0000297.1_g000008 Rmu_ssc0000297.1_g000010 Rmu_ssc0000297.1_g000014
rosa_roxburghii	Rroxscaffold_3G00271150 Rroxscaffold_3G00271220 Rroxscaffold_3G00271570 Rroxscaffold_5G00347120 Rroxscaffold_7G00189320 Rroxscaffold_7G00189400 Rroxscaffold_7G00189580
rosa_rugosa	Rorug06G0120100 Rorug06G0120300 Rorug06G0441800 Rorug06G0445200 Rorug06G0445400 Rorug06G0445500 Rorug06G0445700
rosa_samantha	Rh1DG452400 Rh1DG452600 Rh6DG227700 Rh6DG228000 Rh7AG047500 Rh7AG047900 Rh7AG048000 Rh7AG048100 Rh7AG048300 Rh7AG051500 Rh7AG051700 Rh7BG047800 Rh7BG047900 Rh7BG048100 Rh7CG047900 Rh7CG048100 Rh7CG048200 Rh7CG048300 Rh7CG048400 Rh7CG048500 Rh7CG048900 Rh7CG049600 Rh7CG052800 Rh7DG047000 Rh7DG047100 Rh7DG047200 Rh7DG047300 Rh7DG050500 Rh7DG050800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AciI	CCGC	1 cut(s)	177
AclI	AACGTT	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	255
AdeI	CACNNNGTG	2 cut(s)	17, 19
AfiI	CCNNNNNNNGG	1 cut(s)	48
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	160, 319
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	2 cut(s)	7, 167
AluI	AGCT	2 cut(s)	7, 167
Alw26I	GTCTC	2 cut(s)	46, 210
Ama87I	CYCGRG	1 cut(s)	207
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	72
AvaI	CYCGRG	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	102
BclI	TGATCA	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	46, 210
BfaI	CTAG	1 cut(s)	361
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	2 cut(s)	86, 178
BlsI	GCNGC	2 cut(s)	87, 179
Bme1390I	CCNGG	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	154
BsaHI	GRCGYC	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	194, 202
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMI	GCAATG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	194, 202
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	72
BsgI	GTGCAG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	2 cut(s)	46, 210
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	30, 142, 346
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	194, 202
BssMI	GATC	3 cut(s)	30, 142, 346
BssNI	GRCGYC	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	17, 315
BstACI	GRCGYC	1 cut(s)	255
BstBAI	YACGTR	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	218
BstKTI	GATC	3 cut(s)	33, 145, 349
BstMAI	GTCTC	2 cut(s)	46, 210
BstMBI	GATC	3 cut(s)	30, 142, 346
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	218
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 311
Cac8I	GCNNGC	1 cut(s)	9
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	5 cut(s)	7, 38, 135, 167, 193
CviKI_1	RGCY	5 cut(s)	7, 38, 135, 167, 193
DpnI	GATC	3 cut(s)	32, 144, 348
DpnII	GATC	3 cut(s)	30, 142, 346
DraIII	CACNNNGTG	2 cut(s)	17, 19
EaeI	YGGCCR	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	100
FaeI	CATG	1 cut(s)	356
FaiI	YATR	1 cut(s)	354
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	86, 178
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	2 cut(s)	86, 178
FspBI	CTAG	1 cut(s)	361
GluI	GCNGC	2 cut(s)	86, 178
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	1 cut(s)	356
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	151, 229
Hpy188III	TCNNGA	1 cut(s)	207
Hpy8I	GTNNAC	2 cut(s)	151, 229
Hpy99I	CGWCG	1 cut(s)	260
HpyCH4III	ACNGT	2 cut(s)	17, 315
HpyCH4IV	ACGT	3 cut(s)	123, 153, 255
HpyCH4V	TGCA	4 cut(s)	11, 22, 59, 311
HpySE526I	ACGT	3 cut(s)	123, 153, 255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	30, 142, 346
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	361
MaeII	ACGT	3 cut(s)	123, 153, 255
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	3 cut(s)	32, 144, 348
MboI	GATC	3 cut(s)	30, 142, 346
MboII	GAAGA	1 cut(s)	341
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	2 cut(s)	72, 306
MnlI	CCTC	5 cut(s)	99, 203, 230, 265, 268
MspR9I	CCNGG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	30, 142, 346
NlaIII	CATG	1 cut(s)	356
NmuCI	GTSAC	1 cut(s)	61
PaeR7I	CTCGAG	1 cut(s)	207
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	87, 179
Ppu21I	YACGTR	1 cut(s)	154
Psp1406I	AACGTT	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	346
PsyI	GACNNNGTC	1 cut(s)	257
SatI	GCNGC	2 cut(s)	86, 178
Sau3AI	GATC	3 cut(s)	30, 142, 346
ScrFI	CCNGG	1 cut(s)	102
SetI	ASST	7 cut(s)	9, 106, 126, 156, 169, 189, 258
Sfr274I	CTCGAG	1 cut(s)	207
SlaI	CTCGAG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	2 cut(s)	72, 306
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	17, 315
TaiI	ACGT	3 cut(s)	126, 156, 258
TaqI	TCGA	2 cut(s)	129, 208
TasI	AATT	2 cut(s)	72, 306
TauI	GCSGC	1 cut(s)	180
TscAI	CASTG	2 cut(s)	66, 318
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	341
TspRI	CASTG	2 cut(s)	66, 318
Tth111I	GACNNNGTC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	72
XhoI	CTCGAG	1 cut(s)	207
XspI	CTAG	1 cut(s)	361
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.