Rh7BG047900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000707
Physical Location & Seq
Forward (+)
3145051 .. 3145431
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG047900.1

Sequence Viewer

Length: 381 bp
ATGGCGGACGAGTCCAACTTTATAAAGTATCTGAGGAAATCAGATGTGAATGACAGACTTGTAGTGACTGATAAGATGGCTCGCGTGATGCCTATTGCAGAACCAGGAAGTGCCACTGCAATCCGAGTCTTGGACGATAAGGGTGACGATTATCAGTTCTACGTGGCTGGAAGAAGAGGCAAATATAGGAAACCAATTTTCAAGCGCAAAGACTGGAGAGCCTTCATCAAAAAACGAGGAGCCAAAGAAGGCGACTCCCTCTGTTTCTGGCGAGAGGTGAACGAAAGGAGGCATACGGAATACCGCATCGAAGTCATCCCGCCTTTTCATGAATCTCGAAAAAAATTGAGGAATTGGGCCGCCCACGGTCTAGCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.9

Weight (kDa)

9.99

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 7 - 94 4.7e-07 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
AccII CGCG 1 cut(s) 84
AciI CCGC 4 cut(s) 5, 304, 320, 360
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 1 cut(s) 202
AjnI CCWGG 1 cut(s) 103
AoxI GGCC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 357
AsuHPI GGTGA 2 cut(s) 155, 289
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 105
BfaI CTAG 2 cut(s) 371, 379
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 2 cut(s) 78, 315
BpmI CTGGAG 1 cut(s) 235
BsaAI YACGTR 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 364
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 130
BsnI GGCC 1 cut(s) 359
BspACI CCGC 4 cut(s) 5, 304, 320, 360
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 1 cut(s) 24
BspFNI CGCG 1 cut(s) 84
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 241
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 364
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 169
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 364
BstF5I GGATG 1 cut(s) 315
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 207
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstUI CGCG 1 cut(s) 84
BsuRI GGCC 1 cut(s) 359
BtgI CCRYGG 1 cut(s) 364
BtsCI GGATG 1 cut(s) 315
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 82
CciI TCATGA 1 cut(s) 328
CfoI GCGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 357
CviAII CATG 1 cut(s) 329
CviJI RGCY 5 cut(s) 80, 167, 221, 242, 359
CviKI_1 RGCY 5 cut(s) 80, 167, 221, 242, 359
DdeI CTNAG 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
EciI GGCGGA 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 332
FaiI YATR 4 cut(s) 23, 186, 294, 330
FatI CATG 1 cut(s) 328
FauI CCCGC 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 360
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 360
FspBI CTAG 2 cut(s) 371, 379
GlaI GCGC 1 cut(s) 206
GluI GCNGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 1 cut(s) 359
HhaI GCGC 1 cut(s) 207
Hin1II CATG 1 cut(s) 332
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HinfI GANTC 4 cut(s) 11, 126, 254, 332
HphI GGTGA 2 cut(s) 155, 289
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 3 cut(s) 33, 43, 125
Hpy188III TCNNGA 2 cut(s) 329, 336
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 2 cut(s) 232, 242
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 98, 119
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 1 cut(s) 332
HspAI GCGC 1 cut(s) 205
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 5 cut(s) 90, 117, 153, 199, 253
LweI GCATC 2 cut(s) 78, 315
MaeI CTAG 2 cut(s) 371, 379
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 64, 143
MboII GAAGA 2 cut(s) 183, 186
MluCI AATT 3 cut(s) 195, 344, 352
MlyI GAGTC 3 cut(s) 20, 135, 248
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 7 cut(s) 27, 170, 230, 268, 269, 282, 342
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 84
NlaIII CATG 1 cut(s) 332
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 2 cut(s) 64, 143
PagI TCATGA 1 cut(s) 328
PfeI GAWTC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 361
PleI GAGTC 3 cut(s) 19, 134, 248
PpsI GAGTC 3 cut(s) 19, 134, 248
Ppu21I YACGTR 1 cut(s) 163
PsiI TTATAA 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 357
SatI GCNGC 1 cut(s) 360
Sau96I GGNCC 1 cut(s) 357
SchI GAGTC 3 cut(s) 20, 135, 248
ScrFI CCNGG 1 cut(s) 105
SetI ASST 2 cut(s) 165, 279
SfaNI GCATC 2 cut(s) 78, 315
Sse9I AATT 3 cut(s) 195, 344, 352
SsiI CCGC 4 cut(s) 5, 304, 320, 360
SspMI CTAG 2 cut(s) 371, 379
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 309, 337
TasI AATT 3 cut(s) 195, 344, 352
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 1 cut(s) 332
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 2 cut(s) 64, 143
Tsp45I GTSAC 2 cut(s) 64, 143
TspDTI ATGAA 3 cut(s) 214, 317, 345
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 121
XspI CTAG 2 cut(s) 371, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.