Rroxscaffold_7G00189400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000707
Physical Location & Seq
Reverse (-)
29143066 .. 29144256
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189400.1

Sequence Viewer

Length: 651 bp
ATGTCACCCCAAATCCTCAAAATTTCTCTCCTCACTCACTTACAGACTACTTTCAGTTTTTCTAAATTTTCATTTCTGGTAATCATATCGAAAGAGACTACTACCAAGAAAAATCAGGTGGAGACAAACACAATATCCTGTACATCAATGTCTCTACAAATTCGATACGCAGCACTCTGCCTAAATGTCACGCCAAATCCTCAACATTTCTCTTCTCACTCTCTTACGGGCTCTACTGCTCTTAGTATAGTTACCTCTTTCAGTTTTTCTAAATTTTCTTCTCTGGTAATCATATCGATGGAGTACCACGGCCATGTCTATATGAAGAAGCTGACCAAATCTGATGTGAGAGACAGACTTACAGTGTGTACTGAATTGACCGACATCCTGCCTCCTGCAGAACGAAATCGCAGAATTCCAATCGGAGTCCTGGACGACTTGGGTCACGTTTATCGGTTCTATTTGTCTGGTCGAAGAATTGGAAATCTGAATCCAGTTTTCCAGGCCAGAGAATGGAGAGCCTTCATCCGATACCGAGGAGCAGATGTTGATGACAAAATTTATTTCTGGTATGAGGTAAATGAACTTTTTCAAACAGAATATCGCATTGTATTGTTCAGAAACTATTTGCCTCCCCTACCAGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.98

Weight (kDa)

9.49

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 513
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 6 cut(s) 21, 65, 159, 272, 414, 558
AfaI GTAC 3 cut(s) 142, 305, 370
AfiI CCNNNNNNNGG 2 cut(s) 513, 641
AgsI TTSAA 1 cut(s) 593
AjnI CCWGG 3 cut(s) 429, 501, 640
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw26I GTCTC 4 cut(s) 89, 116, 156, 345
AoxI GGCC 2 cut(s) 310, 504
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 6 cut(s) 21, 65, 159, 272, 414, 558
Asp700I GAANNNNTTC 1 cut(s) 588
BanII GRGCYC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 292
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 3 cut(s) 431, 503, 642
BcoDI GTCTC 4 cut(s) 89, 116, 156, 345
BfmI CTRYAG 1 cut(s) 396
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme1390I CCNGG 3 cut(s) 431, 503, 642
BmrFI CCNGG 3 cut(s) 431, 503, 642
BoxI GACNNNNGTC 1 cut(s) 441
Bsa29I ATCGAT 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 307, 535
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bsc4I CCNNNNNNNGG 2 cut(s) 513, 641
Bse1I ACTGG 1 cut(s) 494
BseBI CCWGG 3 cut(s) 431, 503, 642
BseCI ATCGAT 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 307, 535
BseGI GGATG 2 cut(s) 384, 525
BseLI CCNNNNNNNGG 2 cut(s) 513, 641
BseNI ACTGG 1 cut(s) 494
BseRI GAGGAG 2 cut(s) 20, 552
BseXI GCAGC 1 cut(s) 182
BshFI GGCC 2 cut(s) 312, 506
BshVI ATCGAT 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 513, 641
BsmAI GTCTC 4 cut(s) 89, 116, 156, 345
BsnI GGCC 2 cut(s) 312, 506
Bsp1286I GDGCHC 1 cut(s) 233
Bsp1407I TGTACA 1 cut(s) 140
BspANI GGCC 2 cut(s) 312, 506
BspDI ATCGAT 1 cut(s) 296
BspMAI CTGCAG 1 cut(s) 400
BsrGI TGTACA 1 cut(s) 140
BsrI ACTGG 1 cut(s) 494
BssECI CCNNGG 2 cut(s) 307, 535
Bst2UI CCWGG 3 cut(s) 431, 503, 642
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 217
BstAUI TGTACA 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 242
BstDSI CCRYGG 1 cut(s) 307
BstF5I GGATG 2 cut(s) 384, 525
BstMAI GTCTC 4 cut(s) 89, 116, 156, 345
BstNI CCWGG 3 cut(s) 431, 503, 642
BstPAI GACNNNNGTC 1 cut(s) 441
BstSCI CCNGG 3 cut(s) 429, 501, 640
BstSFI CTRYAG 1 cut(s) 396
BstV1I GCAGC 1 cut(s) 182
Bsu15I ATCGAT 1 cut(s) 296
BsuRI GGCC 2 cut(s) 312, 506
BsuTUI ATCGAT 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 307
BtsCI GGATG 2 cut(s) 384, 525
BtsIMutI CAGTG 1 cut(s) 369
ClaI ATCGAT 1 cut(s) 296
CsiI ACCWGGT 1 cut(s) 640
Csp6I GTAC 3 cut(s) 141, 304, 369
CviAII CATG 1 cut(s) 314
CviJI RGCY 5 cut(s) 231, 312, 331, 506, 521
CviKI_1 RGCY 5 cut(s) 231, 312, 331, 506, 521
CviQI GTAC 3 cut(s) 141, 304, 369
DdeI CTNAG 1 cut(s) 242
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 414
EcoRII CCWGG 3 cut(s) 429, 501, 640
EcoT38I GRGCYC 1 cut(s) 233
FaeI CATG 1 cut(s) 317
FaiI YATR 7 cut(s) 86, 248, 293, 315, 321, 323, 573
FatI CATG 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 2 cut(s) 371, 512
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 171
HaeIII GGCC 2 cut(s) 312, 506
Hin1II CATG 1 cut(s) 317
HinfI GANTC 2 cut(s) 426, 490
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 5 cut(s) 343, 425, 489, 530, 620
Hpy8I GTNNAC 1 cut(s) 369
HpyAV CCTTC 1 cut(s) 532
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 1 cut(s) 398
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 1 cut(s) 317
LmnI GCTCC 1 cut(s) 539
Lsp1109I GCAGC 1 cut(s) 182
MabI ACCWGGT 1 cut(s) 640
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 4 cut(s) 3, 187, 250, 443
MboII GAAGA 4 cut(s) 204, 270, 337, 486
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 8 cut(s) 21, 65, 159, 272, 374, 414, 477, 558
MlyI GAGTC 1 cut(s) 435
MnlI CCTC 8 cut(s) 26, 41, 210, 265, 402, 530, 568, 642
MroXI GAANNNNTTC 1 cut(s) 588
MslI CAYNNNNRTG 2 cut(s) 296, 312
MspR9I CCNGG 3 cut(s) 431, 503, 642
MvaI CCWGG 3 cut(s) 431, 503, 642
NlaIII CATG 1 cut(s) 317
NmuCI GTSAC 3 cut(s) 3, 187, 443
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 1 cut(s) 490
PflMI CCANNNNNTGG 1 cut(s) 513
PfoI TCCNGGA 1 cut(s) 429
PkrI GCNGC 1 cut(s) 172
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
PshAI GACNNNNGTC 1 cut(s) 441
Psp6I CCWGG 3 cut(s) 429, 501, 640
PspGI CCWGG 3 cut(s) 429, 501, 640
PstI CTGCAG 1 cut(s) 400
RsaI GTAC 3 cut(s) 142, 305, 370
RsaNI GTAC 3 cut(s) 141, 304, 369
RseI CAYNNNNRTG 2 cut(s) 296, 312
SatI GCNGC 1 cut(s) 171
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 3 cut(s) 431, 503, 642
SduI GDGCHC 1 cut(s) 233
SetI ASST 6 cut(s) 120, 257, 333, 450, 579, 646
SexAI ACCWGGT 1 cut(s) 640
SfcI CTRYAG 1 cut(s) 396
SmiMI CAYNNNNRTG 2 cut(s) 296, 312
Sse9I AATT 8 cut(s) 21, 65, 159, 272, 374, 414, 477, 558
StyD4I CCNGG 3 cut(s) 429, 501, 640
TaaI ACNGT 1 cut(s) 364
TaiI ACGT 1 cut(s) 450
TaqI TCGA 4 cut(s) 89, 163, 296, 472
TaqII GACCGA 1 cut(s) 395
TasI AATT 8 cut(s) 21, 65, 159, 272, 374, 414, 477, 558
TatI WGTACW 2 cut(s) 140, 368
TfiI GAWTC 1 cut(s) 490
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 3 cut(s) 3, 187, 443
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 3 cut(s) 3, 187, 443
TspDTI ATGAA 4 cut(s) 60, 338, 514, 597
TspRI CASTG 1 cut(s) 369
Van91I CCANNNNNTGG 1 cut(s) 513
XapI RAATTY 6 cut(s) 21, 65, 159, 272, 414, 558
XmnI GAANNNNTTC 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.