Rh7AG047500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000707
Physical Location & Seq
Reverse (-)
3224293 .. 3224947
655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG047500.1

Sequence Viewer

Length: 345 bp
ATGGCGTACGAGTCCCACTTTATGAAGTATCTGACGGATACGGATGTTAAAGACAGACTTGAAGTGACTCGTAAGATGGCTAACTTGATGCCTACTGCAGCACCAGGATGTCGCCTTCCAATCAGAGTGTTGGACGATCAGGGTTACTTTTATGAGTTCTACTTGGCTGGAAGAAAAGGCAGATCTAAGAACCCATATTTCATGCCCAGAGAGTGGCTAGCCTTCATCAGAAGACGAGAAGCCAGTCAAGGCGACTCCCTCTGTTTATGGAAAGAAGTGAACGAATTCAGGGGTACGGAATACCGCATCGGAGTCAACCCGCCTTCTGAATATCCACAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.5

Weight (kDa)

8.93

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 213
AciI CCGC 2 cut(s) 304, 320
AcsI RAATTY 2 cut(s) 284, 339
AfaI GTAC 2 cut(s) 8, 295
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 1 cut(s) 62
AjnI CCWGG 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 2 cut(s) 284, 339
Asp700I GAANNNNTTC 1 cut(s) 284
AsuNHI GCTAGC 1 cut(s) 217
BaeI ACNNNNGTAYC 2 cut(s) 30, 63
BbsI GAAGAC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 105
BciVI GTATCC 1 cut(s) 31
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 96
BfuI GTATCC 1 cut(s) 31
BglII AGATCT 1 cut(s) 182
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 2 cut(s) 78, 315
BmtI GCTAGC 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 49, 113
BseLI CCNNNNNNNGG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 110
BsiWI CGTACG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 213
Bsp143I GATC 2 cut(s) 136, 182
BspACI CCGC 2 cut(s) 304, 320
BspMAI CTGCAG 1 cut(s) 100
BspOI GCTAGC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 243
BssMI GATC 2 cut(s) 136, 182
Bst2UI CCWGG 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 49, 113
BstKTI GATC 2 cut(s) 139, 185
BstMBI GATC 2 cut(s) 136, 182
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuI GTATCC 1 cut(s) 31
BtsCI GGATG 2 cut(s) 49, 113
Cac8I GCNNGC 1 cut(s) 219
Csp6I GTAC 2 cut(s) 7, 294
CviAII CATG 1 cut(s) 202
CviJI RGCY 5 cut(s) 80, 167, 217, 221, 242
CviKI_1 RGCY 5 cut(s) 80, 167, 217, 221, 242
CviQI GTAC 2 cut(s) 7, 294
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 138, 184
DpnII GATC 2 cut(s) 136, 182
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 205
FaiI YATR 5 cut(s) 23, 153, 196, 203, 268
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FatI CATG 1 cut(s) 201
FauI CCCGC 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 2 cut(s) 56, 120
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 1 cut(s) 218
GluI GCNGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 205
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 4 cut(s) 11, 67, 254, 312
Hpy166II GTNNAC 2 cut(s) 280, 316
Hpy188I TCNGA 5 cut(s) 33, 125, 230, 311, 328
Hpy8I GTNNAC 2 cut(s) 280, 316
HpyAV CCTTC 3 cut(s) 125, 232, 333
HpyCH4V TGCA 1 cut(s) 98
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 1 cut(s) 205
Kzo9I GATC 2 cut(s) 136, 182
LpnPI CCDG 7 cut(s) 90, 117, 125, 153, 220, 256, 274
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 2 cut(s) 78, 315
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 64, 143
MalI GATC 2 cut(s) 138, 184
MboI GATC 2 cut(s) 136, 182
MboII GAAGA 2 cut(s) 183, 243
MflI RGATCY 1 cut(s) 182
MluCI AATT 2 cut(s) 284, 339
MlyI GAGTC 4 cut(s) 20, 61, 248, 321
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
NdeII GATC 2 cut(s) 136, 182
NheI GCTAGC 1 cut(s) 217
NlaIII CATG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 284
Pfl23II CGTACG 1 cut(s) 6
PflMI CCANNNNNTGG 1 cut(s) 213
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 4 cut(s) 19, 61, 248, 320
PpsI GAGTC 4 cut(s) 19, 61, 248, 320
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspLI CGTACG 1 cut(s) 6
PstI CTGCAG 1 cut(s) 100
PsuI RGATCY 1 cut(s) 182
RsaI GTAC 2 cut(s) 8, 295
RsaNI GTAC 2 cut(s) 7, 294
RseI CAYNNNNRTG 1 cut(s) 106
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 2 cut(s) 136, 182
SchI GAGTC 4 cut(s) 20, 61, 248, 321
ScrFI CCNGG 1 cut(s) 105
SfaNI GCATC 2 cut(s) 78, 315
SfcI CTRYAG 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 106
Sse9I AATT 2 cut(s) 284, 339
SsiI CCGC 2 cut(s) 304, 320
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 103
TasI AATT 2 cut(s) 284, 339
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 38, 190, 214
TspGWI ACGGA 3 cut(s) 50, 56, 311
Van91I CCANNNNNTGG 1 cut(s) 213
XapI RAATTY 2 cut(s) 284, 339
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.