Rmu_sc0003511.1_g000022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003511.1
OG0000707
Physical Location & Seq
Forward (+)
129741 .. 132441
2701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003511.1_g000022.1.cds

Sequence Viewer

Length: 852 bp
atgtctcctctgttagctagagtgctagaccgtgggcggcccaagtcctcaaatcttctcgagattcagaaggcgggttggaagatccaagaccttctgggtgaggataatcaccatttctggatgagatcacttcgatgcgtgcttcttactatcgatcaaccgatggagctccagtacctggaaggccgtccagtgtttgtgaaacatctgaagcaaacagatgtggatagcagactggtactgactactgagatgcttcacatgatcatgcctcctccagatccaaaacatgacactccaatcagagtcttggatgataagggtgacgtctatcagttgtccttgtctgtaagaaagggcccacatctcaaaccagttttccaggccaaagaatggcaagcattcatcagaaaacgaagagccaaagaaaaggacaccatctatttctggcaagaggtgaatgcaattaagcatacagattaccgcatcatgttactaacatgttatctttcccccaagccagaaggtctttcatctctagagccatctgcatctgcagatgaacatgaaaagctagctatgaaggcttgggcggctcacggcgtctacttgcctgagcccattgccctcggcagaggcgatggagacttgaacgacgacgcggaatcggacggtgccgccattgattggattcaattgattggacttagtcgttggctgggtggacttattcgagtaggagtggccgcgtgggtgagcttctccgaggacttgtcggatcggtgggagctaaacgccgagatggtgccgggactgaggctcagttatgagagtgtggaaattgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

32.29

Weight (kDa)

5.75

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 333
AccB1I GGYRCC 2 cut(s) 677, 808
AccB7I CCANNNNNTGG 3 cut(s) 181, 396, 690
AccI GTMKAC 1 cut(s) 609
AccII CGCG 2 cut(s) 665, 752
AciI CCGC 7 cut(s) 37, 74, 487, 596, 665, 681, 750
AclWI GGATC 3 cut(s) 79, 278, 789
AcoI YGGCCR 1 cut(s) 747
AcuI CTGAAG 1 cut(s) 233
AcyI GRCGYC 2 cut(s) 330, 606
AfaI GTAC 2 cut(s) 179, 243
AfiI CCNNNNNNNGG 3 cut(s) 181, 396, 690
AflIII ACRYGT 1 cut(s) 503
AgsI TTSAA 2 cut(s) 655, 698
AjnI CCWGG 2 cut(s) 180, 384
AluBI AGCT 6 cut(s) 17, 172, 577, 581, 762, 793
AluI AGCT 6 cut(s) 17, 172, 577, 581, 762, 793
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 9, 642
AlwI GGATC 3 cut(s) 79, 278, 789
AlwNI CAGNNNCTG 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 5 cut(s) 38, 187, 361, 387, 747
ApaI GGGCCC 1 cut(s) 365
AspS9I GGNCC 3 cut(s) 39, 361, 362
AsuC2I CCSGG 1 cut(s) 813
AsuHPI GGTGA 5 cut(s) 104, 113, 338, 472, 769
AsuNHI GCTAGC 1 cut(s) 577
AvaI CYCGRG 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 365
BanI GGYRCC 2 cut(s) 677, 808
BanII GRGCYC 3 cut(s) 174, 365, 624
Bbv12I GWGCWC 1 cut(s) 174
BccI CCATC 5 cut(s) 160, 449, 556, 638, 799
BceAI ACGGC 2 cut(s) 174, 619
BciT130I CCWGG 2 cut(s) 182, 386
BclI TGATCA 1 cut(s) 267
BcnI CCSGG 1 cut(s) 813
BcoDI GTCTC 2 cut(s) 9, 642
BfaI CTAG 4 cut(s) 18, 26, 542, 578
BfmI CTRYAG 1 cut(s) 558
BisI GCNGC 4 cut(s) 38, 597, 681, 750
BlsI GCNGC 4 cut(s) 39, 598, 682, 751
Bme1390I CCNGG 3 cut(s) 182, 386, 813
BmeT110I CYCGRG 1 cut(s) 59
BmgT120I GGNCC 3 cut(s) 39, 361, 362
BmiI GGNNCC 3 cut(s) 363, 679, 810
BmrFI CCNGG 3 cut(s) 182, 386, 813
BmsI GCATC 4 cut(s) 128, 246, 498, 563
BmtI GCTAGC 1 cut(s) 581
BpmI CTGGAG 2 cut(s) 158, 264
Bpu10I CCTNAGC 1 cut(s) 618
BpuMI CCSGG 1 cut(s) 813
Bsa29I ATCGAT 1 cut(s) 156
BsaHI GRCGYC 2 cut(s) 330, 606
BsaJI CCNNGG 3 cut(s) 31, 631, 768
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 396, 690
Bse1I ACTGG 4 cut(s) 175, 194, 243, 377
Bse3DI GCAATG 1 cut(s) 624
BseBI CCWGG 2 cut(s) 182, 386
BseCI ATCGAT 1 cut(s) 156
BseDI CCNNGG 3 cut(s) 31, 631, 768
BseGI GGATG 2 cut(s) 129, 322
BseLI CCNNNNNNNGG 3 cut(s) 181, 396, 690
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 4 cut(s) 243, 609, 809, 838
BseNI ACTGG 4 cut(s) 175, 194, 243, 377
BseRI GAGGAG 1 cut(s) 267
BseSI GKGCMC 1 cut(s) 365
BseYI CCCAGC 1 cut(s) 721
Bsh1236I CGCG 2 cut(s) 665, 752
BshFI GGCC 5 cut(s) 40, 189, 363, 389, 749
BshNI GGYRCC 2 cut(s) 677, 808
BshVI ATCGAT 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 1 cut(s) 812
BslFI GGGAC 1 cut(s) 828
BslI CCNNNNNNNGG 3 cut(s) 181, 396, 690
BsmAI GTCTC 2 cut(s) 9, 642
BsmFI GGGAC 1 cut(s) 828
BsmI GAATGC 2 cut(s) 404, 469
BsnI GGCC 5 cut(s) 40, 189, 363, 389, 749
BsoBI CYCGRG 1 cut(s) 59
Bsp120I GGGCCC 1 cut(s) 361
Bsp1286I GDGCHC 3 cut(s) 174, 365, 624
Bsp143I GATC 6 cut(s) 84, 128, 157, 267, 283, 781
BspACI CCGC 7 cut(s) 37, 74, 487, 596, 665, 681, 750
BspANI GGCC 5 cut(s) 40, 189, 363, 389, 749
BspCNI CTCAG 4 cut(s) 244, 610, 810, 837
BspDI ATCGAT 1 cut(s) 156
BspFNI CGCG 2 cut(s) 665, 752
BspLI GGNNCC 3 cut(s) 363, 679, 810
BspMAI CTGCAG 1 cut(s) 562
BspOI GCTAGC 1 cut(s) 581
BspPI GGATC 3 cut(s) 79, 278, 789
BspQI GCTCTTC 1 cut(s) 415
BspT107I GGYRCC 2 cut(s) 677, 808
BsrDI GCAATG 1 cut(s) 624
BsrI ACTGG 4 cut(s) 175, 194, 243, 377
BssECI CCNNGG 3 cut(s) 31, 631, 768
BssMI GATC 6 cut(s) 84, 128, 157, 267, 283, 781
BssNI GRCGYC 2 cut(s) 330, 606
Bst2UI CCWGG 2 cut(s) 182, 386
Bst4CI ACNGT 2 cut(s) 32, 677
Bst6I CTCTTC 1 cut(s) 415
BstACI GRCGYC 2 cut(s) 330, 606
BstC8I GCNNGC 3 cut(s) 143, 402, 579
BstDEI CTNAG 5 cut(s) 252, 618, 710, 818, 824
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 2 cut(s) 129, 322
BstFNI CGCG 2 cut(s) 665, 752
BstKTI GATC 6 cut(s) 87, 131, 160, 270, 286, 784
BstMAI GTCTC 2 cut(s) 9, 642
BstMBI GATC 6 cut(s) 84, 128, 157, 267, 283, 781
BstMWI GCNNNNNNNGC 2 cut(s) 587, 596
BstNI CCWGG 2 cut(s) 182, 386
BstNSI RCATGY 1 cut(s) 507
BstSCI CCNGG 3 cut(s) 180, 384, 811
BstSFI CTRYAG 1 cut(s) 558
BstSLI GKGCMC 1 cut(s) 365
BstUI CGCG 2 cut(s) 665, 752
BstX2I RGATCY 2 cut(s) 84, 283
BstYI RGATCY 2 cut(s) 84, 283
Bsu15I ATCGAT 1 cut(s) 156
BsuRI GGCC 5 cut(s) 40, 189, 363, 389, 749
BsuTUI ATCGAT 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 657
BtsCI GGATG 2 cut(s) 129, 322
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 3 cut(s) 143, 402, 579
CaiI CAGNNNCTG 1 cut(s) 181
Cfr13I GGNCC 3 cut(s) 39, 361, 362
ClaI ATCGAT 1 cut(s) 156
CseI GACGC 2 cut(s) 595, 671
Csp6I GTAC 2 cut(s) 178, 242
CviAII CATG 6 cut(s) 265, 271, 293, 493, 504, 569
CviQI GTAC 2 cut(s) 178, 242
DdeI CTNAG 5 cut(s) 252, 618, 710, 818, 824
DpnI GATC 6 cut(s) 86, 130, 159, 269, 285, 783
DpnII GATC 6 cut(s) 84, 128, 157, 267, 283, 781
EaeI YGGCCR 1 cut(s) 747
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 3 cut(s) 174, 365, 624
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 180, 384
EcoT38I GRGCYC 3 cut(s) 174, 365, 624
FaeI CATG 6 cut(s) 268, 274, 296, 496, 507, 572
FaiI YATR 9 cut(s) 266, 272, 294, 477, 494, 505, 570, 584, 831
FaqI GGGAC 1 cut(s) 828
FatI CATG 6 cut(s) 264, 270, 292, 492, 503, 568
FauI CCCGC 1 cut(s) 67
FbaI TGATCA 1 cut(s) 267
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 4 cut(s) 38, 597, 681, 750
FokI GGATG 2 cut(s) 136, 329
FriOI GRGCYC 3 cut(s) 174, 365, 624
Fsp4HI GCNGC 4 cut(s) 38, 597, 681, 750
FspBI CTAG 4 cut(s) 18, 26, 542, 578
GluI GCNGC 4 cut(s) 38, 597, 681, 750
GsaI CCCAGC 1 cut(s) 725
GsuI CTGGAG 2 cut(s) 158, 264
HaeIII GGCC 5 cut(s) 40, 189, 363, 389, 749
HapII CCGG 1 cut(s) 812
HgaI GACGC 2 cut(s) 595, 671
Hin1I GRCGYC 2 cut(s) 330, 606
Hin1II CATG 6 cut(s) 268, 274, 296, 496, 507, 572
HinfI GANTC 4 cut(s) 64, 309, 668, 694
HpaII CCGG 1 cut(s) 812
HphI GGTGA 5 cut(s) 104, 113, 338, 472, 769
Hpy166II GTNNAC 2 cut(s) 610, 728
Hpy188I TCNGA 7 cut(s) 69, 213, 308, 413, 673, 769, 781
Hpy188III TCNNGA 5 cut(s) 59, 61, 121, 281, 542
Hpy8I GTNNAC 2 cut(s) 610, 728
Hpy99I CGWCG 2 cut(s) 662, 665
HpyAV CCTTC 5 cut(s) 64, 104, 179, 521, 580
HpyCH4III ACNGT 2 cut(s) 32, 677
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 3 cut(s) 467, 554, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 587, 596
HpyF3I CTNAG 5 cut(s) 252, 618, 710, 818, 824
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 2 cut(s) 330, 606
Hsp92II CATG 6 cut(s) 268, 274, 296, 496, 507, 572
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 6 cut(s) 84, 128, 157, 267, 283, 781
LguI GCTCTTC 1 cut(s) 415
LmnI GCTCC 3 cut(s) 169, 177, 790
LweI GCATC 4 cut(s) 128, 246, 498, 563
MaeI CTAG 4 cut(s) 18, 26, 542, 578
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 326, 495
MalI GATC 6 cut(s) 86, 130, 159, 269, 285, 783
MboI GATC 6 cut(s) 84, 128, 157, 267, 283, 781
MboII GAAGA 3 cut(s) 47, 94, 432
MfeI CAATTG 1 cut(s) 698
MflI RGATCY 2 cut(s) 84, 283
MhlI GDGCHC 3 cut(s) 174, 365, 624
MluCI AATT 3 cut(s) 468, 698, 843
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 2 cut(s) 59, 759
MseI TTAA 2 cut(s) 471, 850
MslI CAYNNNNRTG 2 cut(s) 136, 269
MspI CCGG 1 cut(s) 812
MspR9I CCNGG 3 cut(s) 182, 386, 813
MunI CAATTG 1 cut(s) 698
Mva1269I GAATGC 2 cut(s) 404, 469
MvaI CCWGG 2 cut(s) 182, 386
MvnI CGCG 2 cut(s) 665, 752
MwoI GCNNNNNNNGC 2 cut(s) 587, 596
NciI CCSGG 1 cut(s) 813
NdeII GATC 6 cut(s) 84, 128, 157, 267, 283, 781
NheI GCTAGC 1 cut(s) 577
NlaIII CATG 6 cut(s) 268, 274, 296, 496, 507, 572
NlaIV GGNNCC 3 cut(s) 363, 679, 810
NmeAIII GCCGAG 2 cut(s) 612, 826
NmuCI GTSAC 1 cut(s) 326
NspI RCATGY 1 cut(s) 507
PaeR7I CTCGAG 1 cut(s) 59
PciI ACATGT 1 cut(s) 503
PciSI GCTCTTC 1 cut(s) 415
PcsI WCGNNNNNNNCGW 1 cut(s) 639
PctI GAATGC 2 cut(s) 404, 469
PfeI GAWTC 3 cut(s) 64, 668, 694
PflFI GACNNNGTC 1 cut(s) 711
PflMI CCANNNNNTGG 3 cut(s) 181, 396, 690
PkrI GCNGC 4 cut(s) 39, 598, 682, 751
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PscI ACATGT 1 cut(s) 503
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 180, 384
PspFI CCCAGC 1 cut(s) 721
PspGI CCWGG 2 cut(s) 180, 384
PspN4I GGNNCC 3 cut(s) 363, 679, 810
PspOMI GGGCCC 1 cut(s) 361
PspPI GGNCC 3 cut(s) 39, 361, 362
PstI CTGCAG 1 cut(s) 562
PstNI CAGNNNCTG 1 cut(s) 181
PsuI RGATCY 2 cut(s) 84, 283
PsyI GACNNNGTC 1 cut(s) 711
RsaI GTAC 2 cut(s) 179, 243
RsaNI GTAC 2 cut(s) 178, 242
RseI CAYNNNNRTG 2 cut(s) 136, 269
SacI GAGCTC 1 cut(s) 174
SapI GCTCTTC 1 cut(s) 415
SaqAI TTAA 2 cut(s) 471, 850
SatI GCNGC 4 cut(s) 38, 597, 681, 750
Sau3AI GATC 6 cut(s) 84, 128, 157, 267, 283, 781
Sau96I GGNCC 3 cut(s) 39, 361, 362
SchI GAGTC 1 cut(s) 318
ScrFI CCNGG 3 cut(s) 182, 386, 813
SduI GDGCHC 3 cut(s) 174, 365, 624
SfaNI GCATC 4 cut(s) 128, 246, 498, 563
SfcI CTRYAG 1 cut(s) 558
Sfr274I CTCGAG 1 cut(s) 59
SlaI CTCGAG 1 cut(s) 59
SmiMI CAYNNNNRTG 2 cut(s) 136, 269
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 3 cut(s) 468, 698, 843
SsiI CCGC 7 cut(s) 37, 74, 487, 596, 665, 681, 750
SspMI CTAG 4 cut(s) 18, 26, 542, 578
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 3 cut(s) 180, 384, 811
TaaI ACNGT 2 cut(s) 32, 677
TaiI ACGT 1 cut(s) 333
TaqI TCGA 4 cut(s) 60, 136, 156, 736
TasI AATT 3 cut(s) 468, 698, 843
TauI GCSGC 4 cut(s) 40, 599, 683, 752
TfiI GAWTC 3 cut(s) 64, 668, 694
Tru1I TTAA 2 cut(s) 471, 850
Tru9I TTAA 2 cut(s) 471, 850
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 5 cut(s) 397, 525, 579, 585, 599
TspRI CASTG 1 cut(s) 201
Tth111I GACNNNGTC 1 cut(s) 711
Van91I CCANNNNNTGG 3 cut(s) 181, 396, 690
XbaI TCTAGA 1 cut(s) 541
XceI RCATGY 1 cut(s) 507
XhoI CTCGAG 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 609
XspI CTAG 4 cut(s) 18, 26, 542, 578
ZraI GACGTC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.