Rmu_sc0030974.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030974.1
OG0000707
Physical Location & Seq
Reverse (-)
2017 .. 2358
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030974.1_g000001.1.cds

Sequence Viewer

Length: 342 bp
atggagaaccagtaccagagccgctgccctgtgaaaaagctgaagcccactgatgtgagtgataggcttgcattgccgaaacatatggctgcagtactgcctcctgcacaaccaggaagcgagattcctatccgagtgttggacctatggcaccgcgtttatcatttccgtttgtctgtaagaagaggccggcgtctcaaaccagttttccagtacaaagaatggcaagacttcgtcagagaccacggagccgaagagggcaacctgatttacttgcggcgggaggtaaatgcagatgcaggtacagaatatcgaattgtcttatacaaagaatatctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.43

Weight (kDa)

9.62

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 150
AccII CGCG 1 cut(s) 156
AciI CCGC 4 cut(s) 22, 154, 277, 280
AcuI CTGAAG 1 cut(s) 62
AcyI GRCGYC 1 cut(s) 193
AfaI GTAC 4 cut(s) 14, 96, 215, 304
AfiI CCNNNNNNNGG 1 cut(s) 139
AjnI CCWGG 1 cut(s) 112
AleI CACNNNNGTG 1 cut(s) 53
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw26I GTCTC 2 cut(s) 200, 234
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 24, 89
AspS9I GGNCC 1 cut(s) 142
AvaII GGWCC 1 cut(s) 142
BanI GGYRCC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 11, 76
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 2 cut(s) 200, 234
BfmI CTRYAG 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 290
BisI GCNGC 4 cut(s) 22, 25, 90, 278
BlsI GCNGC 4 cut(s) 23, 26, 91, 279
BmcAI AGTACT 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 152, 250
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 193
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 244
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse118I RCCGGY 1 cut(s) 189
Bse1I ACTGG 3 cut(s) 10, 203, 211
Bse3DI GCAATG 1 cut(s) 71
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 244
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 71
BseNI ACTGG 3 cut(s) 10, 203, 211
BseXI GCAGC 2 cut(s) 11, 76
BsgI GTGCAG 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 189
BshNI GGYRCC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 200, 234
BsmBI CGTCTC 1 cut(s) 200
BsnI GGCC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 234
BspACI CCGC 4 cut(s) 22, 154, 277, 280
BspANI GGCC 1 cut(s) 189
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 152, 250
BspMAI CTGCAG 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 189
BsrI ACTGG 3 cut(s) 10, 203, 211
BssAI RCCGGY 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 244
BssNI GRCGYC 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 114
Bst6I CTCTTC 2 cut(s) 178, 249
BstACI GRCGYC 1 cut(s) 193
BstC8I GCNNGC 2 cut(s) 69, 191
BstDSI CCRYGG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 156
BstMAI GTCTC 2 cut(s) 200, 234
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 90
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 11, 76
BsuRI GGCC 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 48
BveI ACCTGC 1 cut(s) 290
Cac8I GCNNGC 2 cut(s) 69, 191
Cfr10I RCCGGY 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 142
CseI GACGC 1 cut(s) 182
Csp6I GTAC 4 cut(s) 13, 95, 214, 303
CviJI RGCY 7 cut(s) 21, 40, 46, 67, 89, 189, 251
CviKI_1 RGCY 7 cut(s) 21, 40, 46, 67, 89, 189, 251
CviQI GTAC 4 cut(s) 13, 95, 214, 303
Eam1104I CTCTTC 2 cut(s) 178, 249
EarI CTCTTC 2 cut(s) 178, 249
Eco31I GGTCTC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 200
FaiI YATR 4 cut(s) 84, 86, 148, 325
FalI AAGNNNNNCTT 1 cut(s) 321
FauI CCCGC 1 cut(s) 273
FauNDI CATATG 1 cut(s) 84
Fnu4HI GCNGC 4 cut(s) 22, 25, 90, 278
Fsp4HI GCNGC 4 cut(s) 22, 25, 90, 278
GluI GCNGC 4 cut(s) 22, 25, 90, 278
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 190
HgaI GACGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 193
HinfI GANTC 1 cut(s) 124
HpaII CCGG 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 134, 239
HpyCH4V TGCA 5 cut(s) 71, 92, 107, 293, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
Hsp92I GRCGYC 1 cut(s) 193
KroI GCCGGC 1 cut(s) 189
KroNI GCCGGC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 2 cut(s) 11, 76
LweI GCATC 1 cut(s) 286
MboII GAAGA 2 cut(s) 195, 266
MluCI AATT 1 cut(s) 315
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 4 cut(s) 111, 179, 250, 277
MroNI GCCGGC 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 73
NaeI GCCGGC 1 cut(s) 191
NdeI CATATG 1 cut(s) 84
NgoMIV GCCGGC 1 cut(s) 189
NlaIV GGNNCC 2 cut(s) 152, 250
OliI CACNNNNGTG 1 cut(s) 53
PdiI GCCGGC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 124
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 4 cut(s) 23, 26, 91, 279
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 152, 250
PspPI GGNCC 1 cut(s) 142
PstI CTGCAG 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 4 cut(s) 14, 96, 215, 304
RsaNI GTAC 4 cut(s) 13, 95, 214, 303
RseI CAYNNNNRTG 1 cut(s) 53
SatI GCNGC 4 cut(s) 22, 25, 90, 278
Sau96I GGNCC 1 cut(s) 142
ScaI AGTACT 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 114
SetI ASST 5 cut(s) 42, 147, 267, 288, 304
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 53
Sse9I AATT 1 cut(s) 315
SsiI CCGC 4 cut(s) 22, 154, 277, 280
StyD4I CCNGG 1 cut(s) 112
TaqI TCGA 1 cut(s) 313
TasI AATT 1 cut(s) 315
TatI WGTACW 2 cut(s) 94, 213
TauI GCSGC 2 cut(s) 24, 280
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 1 cut(s) 55
TseI GCWGC 2 cut(s) 24, 89
TspGWI ACGGA 2 cut(s) 158, 261
TspRI CASTG 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 142
ZrmI AGTACT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.