Rroxscaffold_7G00189580

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000707
Physical Location & Seq
Reverse (-)
29328995 .. 29329375
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189580.1

Sequence Viewer

Length: 381 bp
ATGGAGTACCCCGGCCATGCCCTTACAAAGAGGCTGACAGAAACTGATGTGCGAGGTAGACTTGTAGTGCCTACTGAATGGGTCTCATCCATGCTTCCTGCACAGCCAGATCGCAACAATATTCCAATCAAAGTCTTGGACGACGAGGGTCACGTTTATCAGTTCTATTTGTCTATTCGAAGAAATGGATATCTGAAACCAGTTTTCCAGGCCAGAGAATGGAAACGCTTCATCCAATACCGCGACGCTAAAATTGGCGACGAAATTTATTTCTGGTATCAGGTAAATGAACTTATGCAAACACAATATCGCATTGTATTGGTCAGAGACTATTTTCGTCCATCGCCACCCAGGTCTTTGATTGATCGATCTTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

126

Amino Acids

15.13

Weight (kDa)

9.43

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 219
AccI GTMKAC 1 cut(s) 58
AccII CGCG 1 cut(s) 243
AciI CCGC 1 cut(s) 241
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 1 cut(s) 375
AjnI CCWGG 2 cut(s) 207, 350
Alw26I GTCTC 2 cut(s) 88, 321
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 2 cut(s) 13, 210
ApoI RAATTY 1 cut(s) 264
Asp700I GAANNNNTTC 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 12
AsuII TTCGAA 1 cut(s) 178
BccI CCATC 1 cut(s) 349
BciT130I CCWGG 2 cut(s) 209, 352
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 2 cut(s) 88, 321
Bme1390I CCNGG 3 cut(s) 12, 209, 352
BmrFI CCNGG 3 cut(s) 12, 209, 352
BoxI GACNNNNGTC 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 12
Bsa29I ATCGAT 1 cut(s) 367
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 10, 350
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 2 cut(s) 209, 352
BseCI ATCGAT 1 cut(s) 367
BseDI CCNNGG 2 cut(s) 10, 350
BseGI GGATG 2 cut(s) 86, 231
BseLI CCNNNNNNNGG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 2 cut(s) 15, 212
BshVI ATCGAT 1 cut(s) 367
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 2 cut(s) 88, 321
BsnI GGCC 2 cut(s) 15, 212
Bso31I GGTCTC 1 cut(s) 88
Bsp119I TTCGAA 1 cut(s) 178
Bsp143I GATC 3 cut(s) 109, 364, 368
BspACI CCGC 1 cut(s) 241
BspANI GGCC 2 cut(s) 15, 212
BspDI ATCGAT 1 cut(s) 367
BspFNI CGCG 1 cut(s) 243
BspT104I TTCGAA 1 cut(s) 178
BspTNI GGTCTC 1 cut(s) 88
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 10, 350
BssMI GATC 3 cut(s) 109, 364, 368
Bst2UI CCWGG 2 cut(s) 209, 352
BstBI TTCGAA 1 cut(s) 178
BstF5I GGATG 2 cut(s) 86, 231
BstFNI CGCG 1 cut(s) 243
BstKTI GATC 3 cut(s) 112, 367, 371
BstMAI GTCTC 2 cut(s) 88, 321
BstMBI GATC 3 cut(s) 109, 364, 368
BstNI CCWGG 2 cut(s) 209, 352
BstPAI GACNNNNGTC 1 cut(s) 147
BstSCI CCNGG 3 cut(s) 10, 207, 350
BstUI CGCG 1 cut(s) 243
Bsu15I ATCGAT 1 cut(s) 367
BsuRI GGCC 2 cut(s) 15, 212
BsuTUI ATCGAT 1 cut(s) 367
BtgZI GCGATG 1 cut(s) 327
BtsCI GGATG 2 cut(s) 86, 231
CaiI CAGNNNCTG 1 cut(s) 44
ClaI ATCGAT 1 cut(s) 367
CseI GACGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 7
CviAII CATG 2 cut(s) 17, 91
CviJI RGCY 4 cut(s) 15, 34, 106, 212
CviKI_1 RGCY 4 cut(s) 15, 34, 106, 212
CviQI GTAC 1 cut(s) 7
DpnI GATC 3 cut(s) 111, 366, 370
DpnII GATC 3 cut(s) 109, 364, 368
EaeI YGGCCR 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 88
Eco32I GATATC 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 207, 350
EcoRV GATATC 1 cut(s) 191
FaeI CATG 2 cut(s) 20, 94
FaiI YATR 3 cut(s) 18, 92, 296
FatI CATG 2 cut(s) 16, 90
FblI GTMKAC 1 cut(s) 58
FokI GGATG 2 cut(s) 73, 218
HaeIII GGCC 2 cut(s) 15, 212
HapII CCGG 1 cut(s) 12
HgaI GACGC 1 cut(s) 254
Hin1II CATG 2 cut(s) 20, 94
HpaII CCGG 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 195, 326
Hpy8I GTNNAC 1 cut(s) 59
Hpy99I CGWCG 3 cut(s) 146, 248, 263
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 101, 298
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 2 cut(s) 20, 94
Kzo9I GATC 3 cut(s) 109, 364, 368
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 149
MalI GATC 3 cut(s) 111, 366, 370
MboI GATC 3 cut(s) 109, 364, 368
MboII GAAGA 2 cut(s) 192, 363
MluCI AATT 2 cut(s) 252, 264
MnlI CCTC 3 cut(s) 24, 47, 139
MroXI GAANNNNTTC 1 cut(s) 227
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 3 cut(s) 12, 209, 352
MvaI CCWGG 2 cut(s) 209, 352
MvnI CGCG 1 cut(s) 243
NciI CCSGG 1 cut(s) 12
NdeII GATC 3 cut(s) 109, 364, 368
NlaIII CATG 2 cut(s) 20, 94
NmuCI GTSAC 1 cut(s) 149
NspV TTCGAA 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 227
PflMI CCANNNNNTGG 1 cut(s) 219
PshAI GACNNNNGTC 1 cut(s) 147
Psp6I CCWGG 2 cut(s) 207, 350
PspGI CCWGG 2 cut(s) 207, 350
PstNI CAGNNNCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
Sau3AI GATC 3 cut(s) 109, 364, 368
ScrFI CCNGG 3 cut(s) 12, 209, 352
SetI ASST 4 cut(s) 58, 156, 285, 356
SfuI TTCGAA 1 cut(s) 178
Sse9I AATT 2 cut(s) 252, 264
SsiI CCGC 1 cut(s) 241
SspI AATATT 1 cut(s) 121
StyD4I CCNGG 3 cut(s) 10, 207, 350
TaiI ACGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 178, 367
TasI AATT 2 cut(s) 252, 264
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 220, 303
Van91I CCANNNNNTGG 1 cut(s) 219
XapI RAATTY 1 cut(s) 264
XmiI GTMKAC 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.