Rh7CG048400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000707
Physical Location & Seq
Reverse (-)
3389546 .. 3391110
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG048400.1

Sequence Viewer

Length: 318 bp
ATGGAGCTCCAGTACCTGGAAGGCCGTCCAGTGTTTGTGAAACATCTGAAGCAAACAGATGTGGATAGCAGACTGGTACTGACTACTGAGATGCTTCACATGATCATGCCTCATCCAGATCCAGAACGTGACACTACAATCAGAGTCTTGGATGATAAGGGTGACGTCTATCAGTTCGACTTGTCTGTAAGAAAGGGCCCACATCTCAAACCAGTTTTCCAGGCTAAAGAATGGCAAGCATTCATCAGAAAACGAAGAGCCAAAGAAAAGGACACCATCTATTTCTGGCAAGAGATTAAGCCTAAGATGGGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.56

Weight (kDa)

9.22

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 168
AccB7I CCANNNNNTGG 1 cut(s) 16
AclWI GGATC 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 68
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 2 cut(s) 14, 78
AfiI CCNNNNNNNGG 2 cut(s) 16, 308
AjnI CCWGG 2 cut(s) 15, 219
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw21I GWGCWC 1 cut(s) 9
AlwI GGATC 1 cut(s) 113
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 2 cut(s) 22, 196
ApaI GGGCCC 1 cut(s) 200
AspS9I GGNCC 3 cut(s) 196, 197, 311
AsuHPI GGTGA 1 cut(s) 173
AvaII GGWCC 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 200
BanII GRGCYC 2 cut(s) 9, 200
Bbv12I GWGCWC 1 cut(s) 9
BccI CCATC 2 cut(s) 284, 301
BceAI ACGGC 1 cut(s) 9
BciT130I CCWGG 2 cut(s) 17, 221
BclI TGATCA 1 cut(s) 102
Bme1390I CCNGG 2 cut(s) 17, 221
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 3 cut(s) 196, 197, 311
BmiI GGNNCC 2 cut(s) 198, 312
BmrFI CCNGG 2 cut(s) 17, 221
BmsI GCATC 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 165
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 308
Bse1I ACTGG 4 cut(s) 10, 29, 78, 212
BseBI CCWGG 2 cut(s) 17, 221
BseGI GGATG 2 cut(s) 112, 157
BseLI CCNNNNNNNGG 2 cut(s) 16, 308
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 4 cut(s) 10, 29, 78, 212
BseSI GKGCMC 1 cut(s) 200
BshFI GGCC 2 cut(s) 24, 198
BsiHKAI GWGCWC 1 cut(s) 9
BslI CCNNNNNNNGG 2 cut(s) 16, 308
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 2 cut(s) 24, 198
Bsp120I GGGCCC 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 9, 200
Bsp143I GATC 2 cut(s) 102, 118
BspANI GGCC 2 cut(s) 24, 198
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 198, 312
BspPI GGATC 1 cut(s) 113
BspQI GCTCTTC 1 cut(s) 250
BsrI ACTGG 4 cut(s) 10, 29, 78, 212
BssMI GATC 2 cut(s) 102, 118
BssNI GRCGYC 1 cut(s) 165
Bst2UI CCWGG 2 cut(s) 17, 221
Bst6I CTCTTC 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 87, 303
BstF5I GGATG 2 cut(s) 112, 157
BstKTI GATC 2 cut(s) 105, 121
BstMBI GATC 2 cut(s) 102, 118
BstNI CCWGG 2 cut(s) 17, 221
BstSCI CCNGG 2 cut(s) 15, 219
BstSLI GKGCMC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 2 cut(s) 24, 198
BtsCI GGATG 2 cut(s) 112, 157
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 237
CaiI CAGNNNCTG 1 cut(s) 16
Cfr13I GGNCC 3 cut(s) 196, 197, 311
Csp6I GTAC 2 cut(s) 13, 77
CviAII CATG 3 cut(s) 100, 106, 315
CviJI RGCY 6 cut(s) 7, 24, 198, 224, 260, 301
CviKI_1 RGCY 6 cut(s) 7, 24, 198, 224, 260, 301
CviQI GTAC 2 cut(s) 13, 77
DdeI CTNAG 2 cut(s) 87, 303
DpnI GATC 2 cut(s) 104, 120
DpnII GATC 2 cut(s) 102, 118
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Ecl136II GAGCTC 1 cut(s) 7
Eco24I GRGCYC 2 cut(s) 9, 200
Eco47I GGWCC 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 15, 219
EcoT38I GRGCYC 2 cut(s) 9, 200
FaeI CATG 3 cut(s) 103, 109, 318
FaiI YATR 3 cut(s) 101, 107, 316
FatI CATG 3 cut(s) 99, 105, 314
FbaI TGATCA 1 cut(s) 102
FokI GGATG 2 cut(s) 99, 164
FriOI GRGCYC 2 cut(s) 9, 200
HaeIII GGCC 2 cut(s) 24, 198
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 3 cut(s) 103, 109, 318
HinfI GANTC 1 cut(s) 144
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 3 cut(s) 48, 143, 248
Hpy188III TCNNGA 2 cut(s) 116, 122
HpyAV CCTTC 1 cut(s) 14
HpyCH4IV ACGT 2 cut(s) 127, 165
HpyF3I CTNAG 2 cut(s) 87, 303
HpySE526I ACGT 2 cut(s) 127, 165
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 3 cut(s) 103, 109, 318
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 2 cut(s) 102, 118
LguI GCTCTTC 1 cut(s) 250
LmnI GCTCC 2 cut(s) 4, 12
LweI GCATC 1 cut(s) 81
MaeII ACGT 2 cut(s) 127, 165
MaeIII GTNAC 2 cut(s) 128, 161
MalI GATC 2 cut(s) 104, 120
MboI GATC 2 cut(s) 102, 118
MboII GAAGA 1 cut(s) 267
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 2 cut(s) 9, 200
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 1 cut(s) 120
MseI TTAA 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 104
MspR9I CCNGG 2 cut(s) 17, 221
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 2 cut(s) 17, 221
NdeII GATC 2 cut(s) 102, 118
NlaIII CATG 3 cut(s) 103, 109, 318
NlaIV GGNNCC 2 cut(s) 198, 312
NmuCI GTSAC 2 cut(s) 128, 161
PciSI GCTCTTC 1 cut(s) 250
PctI GAATGC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 16
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 15, 219
PspGI CCWGG 2 cut(s) 15, 219
PspN4I GGNNCC 2 cut(s) 198, 312
PspOMI GGGCCC 1 cut(s) 196
PspPI GGNCC 3 cut(s) 196, 197, 311
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 2 cut(s) 14, 78
RsaNI GTAC 2 cut(s) 13, 77
RseI CAYNNNNRTG 1 cut(s) 104
SacI GAGCTC 1 cut(s) 9
SapI GCTCTTC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 297
Sau3AI GATC 2 cut(s) 102, 118
Sau96I GGNCC 3 cut(s) 196, 197, 311
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 2 cut(s) 17, 221
SduI GDGCHC 2 cut(s) 9, 200
SetI ASST 4 cut(s) 9, 18, 130, 168
SfaNI GCATC 1 cut(s) 81
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 104
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 15, 219
TaiI ACGT 2 cut(s) 130, 168
TaqI TCGA 1 cut(s) 177
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 2 cut(s) 128, 161
Tsp45I GTSAC 2 cut(s) 128, 161
TspDTI ATGAA 1 cut(s) 232
TspRI CASTG 1 cut(s) 36
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 311
ZraI GACGTC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.