Rmu_sc0022452.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022452.1
OG0000707
Physical Location & Seq
Reverse (-)
16522 .. 16887
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022452.1_g000004.1.cds

Sequence Viewer

Length: 366 bp
atggagtaccccggccatgcccttaaaaagaggctgacagaaactgatgtgcgaggtagacttgtagtgcctactgaatggatcgcatccatgcttcctgcacagccagatcacaacaatattccaatcaaagtcttggacgacgagggtcacgtttatcagttctatttgtgtgttcgaagaaatggatatctgaaaccagttttccaggccagagaatggaaacgcttcatccaataccgcgaagccaaagttggcgacgaaatttatttctggtatcaggtaaatgaacttatgcaaacacaatatcgcattgtattgctcagagactattttcgtccatcgccaccccaggtctttgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

14.64

Weight (kDa)

8.69

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 219
AccI GTMKAC 1 cut(s) 58
AccII CGCG 1 cut(s) 243
AciI CCGC 1 cut(s) 241
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 219
AjnI CCWGG 2 cut(s) 207, 351
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 1 cut(s) 89
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 2 cut(s) 13, 210
ApoI RAATTY 1 cut(s) 264
Asp700I GAANNNNTTC 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 12
AsuII TTCGAA 1 cut(s) 178
BccI CCATC 1 cut(s) 349
BciT130I CCWGG 2 cut(s) 209, 353
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 321
Bme1390I CCNGG 3 cut(s) 12, 209, 353
BmrFI CCNGG 3 cut(s) 12, 209, 353
BmsI GCATC 1 cut(s) 95
BoxI GACNNNNGTC 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 10, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 2 cut(s) 209, 353
BseDI CCNNGG 2 cut(s) 10, 351
BseGI GGATG 2 cut(s) 86, 231
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 337
BseNI ACTGG 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 2 cut(s) 15, 212
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 321
BsnI GGCC 2 cut(s) 15, 212
Bsp119I TTCGAA 1 cut(s) 178
Bsp143I GATC 2 cut(s) 81, 109
BspACI CCGC 1 cut(s) 241
BspANI GGCC 2 cut(s) 15, 212
BspCNI CTCAG 1 cut(s) 336
BspFNI CGCG 1 cut(s) 243
BspPI GGATC 1 cut(s) 89
BspT104I TTCGAA 1 cut(s) 178
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 10, 351
BssMI GATC 2 cut(s) 81, 109
Bst2UI CCWGG 2 cut(s) 209, 353
BstBI TTCGAA 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 323
BstF5I GGATG 2 cut(s) 86, 231
BstFNI CGCG 1 cut(s) 243
BstKTI GATC 2 cut(s) 84, 112
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 2 cut(s) 81, 109
BstNI CCWGG 2 cut(s) 209, 353
BstPAI GACNNNNGTC 1 cut(s) 147
BstSCI CCNGG 3 cut(s) 10, 207, 351
BstUI CGCG 1 cut(s) 243
BsuRI GGCC 2 cut(s) 15, 212
BtgZI GCGATG 1 cut(s) 327
BtsCI GGATG 2 cut(s) 86, 231
CaiI CAGNNNCTG 1 cut(s) 44
Csp6I GTAC 1 cut(s) 7
CviAII CATG 2 cut(s) 17, 91
CviJI RGCY 5 cut(s) 15, 34, 106, 212, 248
CviKI_1 RGCY 5 cut(s) 15, 34, 106, 212, 248
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 323
DpnI GATC 2 cut(s) 83, 111
DpnII GATC 2 cut(s) 81, 109
EaeI YGGCCR 1 cut(s) 13
Eco32I GATATC 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 207, 351
EcoRV GATATC 1 cut(s) 191
FaeI CATG 2 cut(s) 20, 94
FaiI YATR 3 cut(s) 18, 92, 296
FatI CATG 2 cut(s) 16, 90
FblI GTMKAC 1 cut(s) 58
FokI GGATG 2 cut(s) 73, 218
HaeIII GGCC 2 cut(s) 15, 212
HapII CCGG 1 cut(s) 12
Hin1II CATG 2 cut(s) 20, 94
HpaII CCGG 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 195, 326
Hpy8I GTNNAC 1 cut(s) 59
Hpy99I CGWCG 2 cut(s) 146, 263
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 101, 298
HpyF3I CTNAG 1 cut(s) 323
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 2 cut(s) 20, 94
Kzo9I GATC 2 cut(s) 81, 109
LweI GCATC 1 cut(s) 95
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 149
MalI GATC 2 cut(s) 83, 111
MboI GATC 2 cut(s) 81, 109
MboII GAAGA 1 cut(s) 192
MluCI AATT 1 cut(s) 264
MnlI CCTC 3 cut(s) 24, 47, 139
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 1 cut(s) 24
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 3 cut(s) 12, 209, 353
MvaI CCWGG 2 cut(s) 209, 353
MvnI CGCG 1 cut(s) 243
NciI CCSGG 1 cut(s) 12
NdeII GATC 2 cut(s) 81, 109
NlaIII CATG 2 cut(s) 20, 94
NmuCI GTSAC 1 cut(s) 149
NspV TTCGAA 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 227
PflMI CCANNNNNTGG 1 cut(s) 219
PshAI GACNNNNGTC 1 cut(s) 147
Psp6I CCWGG 2 cut(s) 207, 351
PspGI CCWGG 2 cut(s) 207, 351
PstNI CAGNNNCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 24
Sau3AI GATC 2 cut(s) 81, 109
ScrFI CCNGG 3 cut(s) 12, 209, 353
SetI ASST 4 cut(s) 58, 156, 285, 357
SfaNI GCATC 1 cut(s) 95
SfuI TTCGAA 1 cut(s) 178
Sse9I AATT 1 cut(s) 264
SsiI CCGC 1 cut(s) 241
SspI AATATT 1 cut(s) 121
StyD4I CCNGG 3 cut(s) 10, 207, 351
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 178
TasI AATT 1 cut(s) 264
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 220, 303
Van91I CCANNNNNTGG 1 cut(s) 219
XapI RAATTY 1 cut(s) 264
XmiI GTMKAC 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.