Prupe.8G119000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000707
Physical Location & Seq
Reverse (-)
14611876 .. 14612199
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G119000.1

Sequence Viewer

Length: 324 bp
ATGGTTAGGATTGTGAAAGTGTTGAGAAAGACCGATGTCTCTCAAAGACTTGGAGTGACCACGGAAATGCTGAATGAGCTGCCTCCTTACAATCGAGAGCATGATGTGCCAGTCAGAGTTCTAGACGATACAGGTATGATTTACGAGTTCAAATTATCTGTCAGGGCTGAGGGAGCTTTAAAGCCTGTTTTCCAATACCAAGAATGGAGAGCCTTTGTCAAGCGCAGAAACATTAAAGCTGGGGACAGAATCTATTTCTGGGAGGAGGCAAGCGTGGCTCATCAAACTGAATATCGAATTGCACTGCTTAGAACTTTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.7

Weight (kDa)

9.57

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 3 cut(s) 79, 176, 239
AluI AGCT 3 cut(s) 79, 176, 239
Alw26I GTCTC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 79
ArsI GACNNNNNNTTYG 2 cut(s) 144, 176
AspLEI GCGC 1 cut(s) 225
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 1 cut(s) 122
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
BoxI GACNNNNGTC 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 239
BslFI GGGAC 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 160
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 2 cut(s) 168, 308
BstDSI CCRYGG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 225
BstMAI GTCTC 1 cut(s) 43
BstMWI GCNNNNNNNGC 4 cut(s) 76, 106, 173, 275
BstPAI GACNNNNGTC 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 302
BtsIMutI CAGTG 1 cut(s) 302
Cac8I GCNNGC 1 cut(s) 271
CfoI GCGC 1 cut(s) 225
CviAII CATG 1 cut(s) 101
CviJI RGCY 7 cut(s) 79, 167, 176, 184, 212, 239, 278
CviKI_1 RGCY 7 cut(s) 79, 167, 176, 184, 212, 239, 278
DdeI CTNAG 2 cut(s) 168, 308
DraI TTTAAA 1 cut(s) 180
FaeI CATG 1 cut(s) 104
FaiI YATR 2 cut(s) 102, 137
FaqI GGGAC 1 cut(s) 257
FatI CATG 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 80
GsaI CCCAGC 1 cut(s) 243
HhaI GCGC 1 cut(s) 225
Hin1II CATG 1 cut(s) 104
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HinfI GANTC 1 cut(s) 249
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 2 cut(s) 95, 122
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 106, 173, 275
HpyF3I CTNAG 2 cut(s) 168, 308
Hsp92II CATG 1 cut(s) 104
HspAI GCGC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 6 cut(s) 117, 123, 148, 198, 225, 244
Lsp1109I GCAGC 1 cut(s) 66
MaeI CTAG 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 55
MluCI AATT 2 cut(s) 152, 297
MnlI CCTC 4 cut(s) 93, 163, 256, 259
MseI TTAA 2 cut(s) 179, 234
MslI CAYNNNNRTG 1 cut(s) 65
MwoI GCNNNNNNNGC 4 cut(s) 76, 106, 173, 275
NlaIII CATG 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 249
PkrI GCNGC 1 cut(s) 81
PshAI GACNNNNGTC 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 2 cut(s) 179, 234
SatI GCNGC 1 cut(s) 80
SetI ASST 4 cut(s) 81, 136, 178, 241
SmiMI CAYNNNNRTG 1 cut(s) 65
Sse9I AATT 2 cut(s) 152, 297
SspMI CTAG 1 cut(s) 122
TaqI TCGA 2 cut(s) 94, 295
TaqII GACCGA 1 cut(s) 47
TasI AATT 2 cut(s) 152, 297
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 2 cut(s) 179, 234
Tru9I TTAA 2 cut(s) 179, 234
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 55
TspGWI ACGGA 1 cut(s) 77
TspRI CASTG 1 cut(s) 309
XbaI TCTAGA 1 cut(s) 121
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.