Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003634

Physical Location & Seq

Genomic Coordinates Reverse (-)

2621974 .. 2622900

Gene Structure 927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAGTCTGCAAACATCTTTGGATCCGATGAGGATTGTCGCAGCTGTGAATCTGGATGGACGATGTATTTAGCCTCACAGTCCCATGATCGTGACGACGATTGTTACTATGGTGATGATGATGAAGAAGAAGAAGATAGCGATGGTGGTGATTCAATGGATTCTGATGCATCTTCTGGTCCCATGGAAGCCACATCATATCTCAAACTTGCTCAAGAGATTGAGGAGCAAAACTCTATAAAGAAGAAGAAGAAAAAGACTAATGAAGAGATGGTTTTGGTGGAGACTACTAGGGTTCACAACAACATTAATCATGATGATGATGATGATGATGACGAAGATGATGGGGATAATCATGATTATGATGATGGTAATGATAGCTACAGTGTAGTTCATAGCTACGTTGGTTCGGTTAGACAAAAAGGGTTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.2

Weight (kDa)

4.05

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08150
fragaria_vesca	FvH4_4g28720 FvH4_5g13090 FvH4_5g13090
prunus_persica	Prupe.1G298800_v2.0.a1 Prupe.1G298800_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1
pyrus_communis	pycom13g04770
rosa_chinensis	RchiOBHm_Chr4g0436841 RchiOBHm_Chr7g0184051
rosa_laevigata	RLG00000005006 RLG00000006492
rosa_multiflora	Rmu_co8463551.1_g000001 Rmu_sc0004712.1_g000012 Rmu_sc0007533.1_g000014
rosa_roxburghii	Rroxscaffold_3G00269950 Rroxscaffold_5G00377910
rosa_rugosa	Rorug04G0296600 Rorug06G0461700 Rorug06G0461700
rosa_samantha	Rh4AG351000 Rh4BG360000 Rh4CG374300 Rh4DG354000 Rh7AG063400 Rh7BG063500 Rh7CG064400 Rh7DG063900
rosa_wichuraiana	Rw0G022810 Rw4G030720 Rw7G005230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	18, 31
AgsI	TTSAA	1 cut(s)	156
AluBI	AGCT	3 cut(s)	45, 381, 399
AluI	AGCT	3 cut(s)	45, 381, 399
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	2 cut(s)	18, 31
ApeKI	GCWGC	1 cut(s)	42
AseI	ATTAAT	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	125, 161
AvaII	GGWCC	1 cut(s)	179
BamHI	GGATCC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	5 cut(s)	51, 137, 265, 338, 362
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	382
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	25, 181
BmsI	GCATC	2 cut(s)	157, 179
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpuEI	CTTGAG	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	54
BslFI	GGGAC	2 cut(s)	67, 165
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	2 cut(s)	67, 165
Bsp143I	GATC	2 cut(s)	23, 88
Bsp19I	CCATGG	1 cut(s)	183
BspHI	TCATGA	2 cut(s)	313, 355
BspLI	GGNNCC	2 cut(s)	25, 181
BspPI	GGATC	2 cut(s)	18, 31
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	23, 88
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	81, 386
Bst6I	CTCTTC	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	26, 91
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	2 cut(s)	23, 88
BstSFI	CTRYAG	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	183
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	391
CciI	TCATGA	2 cut(s)	313, 355
Cfr13I	GGNCC	1 cut(s)	179
CviAII	CATG	4 cut(s)	86, 184, 314, 356
CviJI	RGCY	5 cut(s)	45, 74, 191, 381, 399
CviKI_1	RGCY	5 cut(s)	45, 74, 191, 381, 399
DpnI	GATC	2 cut(s)	25, 90
DpnII	GATC	2 cut(s)	23, 88
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	183
EcoT22I	ATGCAT	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	4 cut(s)	89, 187, 317, 359
FaiI	YATR	9 cut(s)	87, 111, 185, 199, 239, 315, 357, 363, 396
FaqI	GGGAC	2 cut(s)	67, 165
FatI	CATG	4 cut(s)	85, 183, 313, 355
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	43
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	1 cut(s)	43
Hin1II	CATG	4 cut(s)	89, 187, 317, 359
HinfI	GANTC	4 cut(s)	5, 50, 152, 161
HphI	GGTGA	2 cut(s)	125, 161
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	28, 166
Hpy188III	TCNNGA	5 cut(s)	54, 92, 215, 314, 356
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	1 cut(s)	101
HpyCH4III	ACNGT	2 cut(s)	81, 386
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	2 cut(s)	11, 170
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	4 cut(s)	89, 187, 317, 359
Kzo9I	GATC	2 cut(s)	23, 88
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	2 cut(s)	39, 162
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	2 cut(s)	157, 179
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	2 cut(s)	92, 104
MalI	GATC	2 cut(s)	25, 90
MboI	GATC	2 cut(s)	23, 88
MflI	RGATCY	1 cut(s)	23
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	3 cut(s)	25, 85, 217
Mph1103I	ATGCAT	1 cut(s)	172
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	3 cut(s)	90, 318, 360
MspA1I	CMGCKG	1 cut(s)	45
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	23, 88
NlaIII	CATG	4 cut(s)	89, 187, 317, 359
NlaIV	GGNNCC	2 cut(s)	25, 181
NmuCI	GTSAC	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	172
PagI	TCATGA	2 cut(s)	313, 355
PfeI	GAWTC	3 cut(s)	50, 152, 161
PkrI	GCNGC	1 cut(s)	44
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PshBI	ATTAAT	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	25, 181
PspPI	GGNCC	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	45
RseI	CAYNNNNRTG	3 cut(s)	90, 318, 360
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	2 cut(s)	23, 88
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	14
SetI	ASST	4 cut(s)	47, 383, 401, 405
SfaNI	GCATC	2 cut(s)	157, 179
SfcI	CTRYAG	1 cut(s)	382
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	3 cut(s)	90, 318, 360
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
SspMI	CTAG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	81, 386
TaiI	ACGT	1 cut(s)	405
TfiI	GAWTC	3 cut(s)	50, 152, 161
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	3 cut(s)	138, 279, 383
TspRI	CASTG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	179
VspI	ATTAAT	1 cut(s)	309
XspI	CTAG	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.