Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003634

Physical Location & Seq

Genomic Coordinates Forward (+)

3169191 .. 3169607

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCGAAGAATTGGAGTGGGAGTAGCGAGTCTGGGTGGACAATGTATATTGGCTCCCCCATCATGCGTAGCGAAAGTAACGAAGTTTACTACAATATTAGTGATCGATAAAAAAGGGGGTGGAAAAATCAATGGCAGGAACTGCATTGTTGATCGTCATTATGATGGTGAGAGTGATGACTCCATGGTTTCAGACGCCTCCTCCGGCCCAAGCCACCGTGAAGAAGTACTACTTCCACGTGGGATCGGCGGCAGAAATCGCAGCGGCGGATGGCGGCTCAGGCATGCAGATAGAGATAAGAAAGTAACTTGCAGAAAGGAGAAGAAGAGAGAGGATGAAAGATTAAGGGTCAGAGAAAAGGGGGAGGAGGAGGAGGAGTTGCTGCACAAGGCAGATAGTGCTGAAAGTCAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.27

Weight (kDa)

9.16

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08150
fragaria_vesca	FvH4_4g28720 FvH4_5g13090 FvH4_5g13090
prunus_persica	Prupe.1G298800_v2.0.a1 Prupe.1G298800_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1
pyrus_communis	pycom13g04770
rosa_chinensis	RchiOBHm_Chr4g0436841 RchiOBHm_Chr7g0184051
rosa_laevigata	RLG00000005006 RLG00000006492
rosa_multiflora	Rmu_co8463551.1_g000001 Rmu_sc0004712.1_g000012 Rmu_sc0007533.1_g000014
rosa_roxburghii	Rroxscaffold_3G00269950 Rroxscaffold_5G00377910
rosa_rugosa	Rorug04G0296600 Rorug06G0461700 Rorug06G0461700
rosa_samantha	Rh4AG351000 Rh4BG360000 Rh4CG374300 Rh4DG354000 Rh7AG063400 Rh7BG063500 Rh7CG064400 Rh7DG063900
rosa_wichuraiana	Rw0G022810 Rw4G030720 Rw7G005230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	249, 264, 267, 274
AclWI	GGATC	1 cut(s)	251
AcvI	CACGTG	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	141
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	2 cut(s)	261, 382
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	179
BarI	GAAGNNNNNNTAC	2 cut(s)	213, 245
BbrPI	CACGTG	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	273, 369
BccI	CCATC	3 cut(s)	67, 158, 264
BisI	GCNGC	5 cut(s)	250, 262, 265, 275, 383
BlsI	GCNGC	5 cut(s)	251, 263, 266, 276, 384
BmcAI	AGTACT	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	54
Bpu10I	CCTNAGC	1 cut(s)	278
Bsa29I	ATCGAT	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	6 cut(s)	6, 36, 185, 215, 362, 392
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	2 cut(s)	275, 340
BseMII	CTCAG	1 cut(s)	292
BseRI	GAGGAG	5 cut(s)	190, 380, 383, 386, 389
BseXI	GCAGC	2 cut(s)	273, 369
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	207
BshVI	ATCGAT	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	204
BsnI	GGCC	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	102, 151, 243
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	4 cut(s)	249, 264, 267, 274
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	291
BspDI	ATCGAT	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	54
BspPI	GGATC	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	3 cut(s)	102, 151, 243
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	195
BstAPI	GCANNNNNTGC	2 cut(s)	141, 398
BstBAI	YACGTR	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	278
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	275, 340
BstKTI	GATC	3 cut(s)	105, 154, 246
BstMBI	GATC	3 cut(s)	102, 151, 243
BstMWI	GCNNNNNNNGC	4 cut(s)	141, 258, 280, 398
BstNSI	RCATGY	1 cut(s)	287
BstV1I	GCAGC	2 cut(s)	273, 369
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	207
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	275, 340
Cac8I	GCNNGC	1 cut(s)	285
CaiI	CAGNNNCTG	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	206
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	3 cut(s)	63, 184, 284
CviJI	RGCY	4 cut(s)	53, 207, 213, 277
CviKI_1	RGCY	4 cut(s)	53, 207, 213, 277
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	3 cut(s)	104, 153, 245
DpnII	GATC	3 cut(s)	102, 151, 243
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
EciI	GGCGGA	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	183
Eco72I	CACGTG	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	3 cut(s)	66, 187, 287
FaiI	YATR	5 cut(s)	47, 64, 162, 185, 285
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	3 cut(s)	62, 183, 283
Fnu4HI	GCNGC	5 cut(s)	250, 262, 265, 275, 383
FokI	GGATG	2 cut(s)	282, 347
Fsp4HI	GCNGC	5 cut(s)	250, 262, 265, 275, 383
GluI	GCNGC	5 cut(s)	250, 262, 265, 275, 383
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	66, 187, 287
HinfI	GANTC	2 cut(s)	28, 179
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	2 cut(s)	38, 87
Hpy188I	TCNGA	2 cut(s)	193, 353
Hpy8I	GTNNAC	2 cut(s)	38, 87
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	4 cut(s)	144, 287, 312, 385
HpyF10VI	GCNNNNNNNGC	4 cut(s)	141, 258, 280, 398
HpyF3I	CTNAG	1 cut(s)	278
HpySE526I	ACGT	1 cut(s)	238
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	66, 187, 287
Kzo9I	GATC	3 cut(s)	102, 151, 243
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	5 cut(s)	17, 121, 217, 265, 395
Lsp1109I	GCAGC	2 cut(s)	273, 369
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	2 cut(s)	76, 304
MalI	GATC	3 cut(s)	104, 153, 245
MboI	GATC	3 cut(s)	102, 151, 243
MboII	GAAGA	4 cut(s)	18, 233, 334, 337
MluCI	AATT	1 cut(s)	9
MlyI	GAGTC	2 cut(s)	37, 173
MnlI	CCTC	7 cut(s)	208, 211, 325, 358, 361, 364, 367
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	4 cut(s)	141, 258, 280, 398
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	3 cut(s)	102, 151, 243
NlaIII	CATG	3 cut(s)	66, 187, 287
NlaIV	GGNNCC	1 cut(s)	54
NspI	RCATGY	1 cut(s)	287
PaeI	GCATGC	1 cut(s)	287
PkrI	GCNGC	5 cut(s)	251, 263, 266, 276, 384
PleI	GAGTC	2 cut(s)	36, 173
PmaCI	CACGTG	1 cut(s)	239
PmlI	CACGTG	1 cut(s)	239
PpsI	GAGTC	2 cut(s)	36, 173
Ppu21I	YACGTR	1 cut(s)	239
PspCI	CACGTG	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	141
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	5 cut(s)	250, 262, 265, 275, 383
Sau3AI	GATC	3 cut(s)	102, 151, 243
Sau96I	GGNCC	1 cut(s)	206
ScaI	AGTACT	1 cut(s)	228
SchI	GAGTC	2 cut(s)	37, 173
SetI	ASST	2 cut(s)	241, 414
SmiMI	CAYNNNNRTG	1 cut(s)	162
SphI	GCATGC	1 cut(s)	287
Sse9I	AATT	1 cut(s)	9
SsiI	CCGC	4 cut(s)	249, 264, 267, 274
SspI	AATATT	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	105
TasI	AATT	1 cut(s)	9
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	3 cut(s)	252, 267, 277
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseI	GCWGC	2 cut(s)	261, 382
TspDTI	ATGAA	1 cut(s)	351
XceI	RCATGY	1 cut(s)	287
ZrmI	AGTACT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.