Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003634

Physical Location & Seq

Genomic Coordinates Forward (+)

65928103 .. 65928784

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG351000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAGTCTTCCCAAGTTGTTAATGCTGAGAAGTGGAGTGGCAATGGTGAGTCTGGGTGGACAATGTACATTGCCTCCTCCATTCATGGTGAAAGACATGGTGTTTATTCCAGTACCCATGATGCAACCAAAGAAAATAAGGTGAGTGTTGAGCACAAAGACGACGGTGAAGAGAGTGATGATTCCATGGCTTCGGATGCCTCCTCTGGCCCAAGTCACACTGAGAGAAGTCGCAGCGCAACTCGTCTCAGGCATGCAGAAAAGGAAGGGAATGTCAAGAAACACAGCACAAAGAAGAAGAAGAAGAAGAAGAATGAAATTACAATGATCAAAGGAGAGAAAGCTGAGCAGGAAATATTGCTGCACAAGGCAGATAGTGCTGCTAGTCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.46

Weight (kDa)

7.15

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08150
fragaria_vesca	FvH4_4g28720 FvH4_5g13090 FvH4_5g13090
prunus_persica	Prupe.1G298800_v2.0.a1 Prupe.1G298800_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1
pyrus_communis	pycom13g04770
rosa_chinensis	RchiOBHm_Chr4g0436841 RchiOBHm_Chr7g0184051
rosa_laevigata	RLG00000005006 RLG00000006492
rosa_multiflora	Rmu_co8463551.1_g000001 Rmu_sc0004712.1_g000012 Rmu_sc0007533.1_g000014
rosa_roxburghii	Rroxscaffold_3G00269950 Rroxscaffold_5G00377910
rosa_rugosa	Rorug04G0296600 Rorug06G0461700 Rorug06G0461700
rosa_samantha	Rh4AG351000 Rh4BG360000 Rh4CG374300 Rh4DG354000 Rh7AG063400 Rh7BG063500 Rh7CG064400 Rh7DG063900
rosa_wichuraiana	Rw0G022810 Rw4G030720 Rw7G005230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	68, 115
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	3 cut(s)	234, 361, 380
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	4 cut(s)	59, 101, 154, 179
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	3 cut(s)	246, 348, 367
BclI	TGATCA	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	384
BisI	GCNGC	3 cut(s)	235, 362, 381
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	3 cut(s)	236, 363, 382
BmgT120I	GGNCC	1 cut(s)	209
BmsI	GCATC	2 cut(s)	112, 187
Bpu1102I	GCTNAGC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bse1I	ACTGG	1 cut(s)	111
Bse3DI	GCAATG	2 cut(s)	49, 69
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	202
BseMI	GCAATG	2 cut(s)	49, 69
BseMII	CTCAG	4 cut(s)	18, 213, 262, 336
BseNI	ACTGG	1 cut(s)	111
BseRI	GAGGAG	2 cut(s)	67, 193
BseXI	GCAGC	3 cut(s)	246, 348, 367
BsgI	GTGCAG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	251
BsmBI	CGTCTC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	327
Bsp1720I	GCTNAGC	1 cut(s)	345
Bsp19I	CCATGG	1 cut(s)	186
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	4 cut(s)	19, 214, 261, 337
BsrDI	GCAATG	2 cut(s)	49, 69
BsrGI	TGTACA	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstAUI	TGTACA	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	4 cut(s)	27, 222, 248, 345
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	1 cut(s)	330
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 377
BstNSI	RCATGY	1 cut(s)	257
BstV1I	GCAGC	3 cut(s)	246, 348, 367
BsuRI	GGCC	1 cut(s)	210
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	255
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	67, 114
CviAII	CATG	5 cut(s)	86, 98, 119, 187, 254
CviJI	RGCY	3 cut(s)	191, 210, 344
CviKI_1	RGCY	3 cut(s)	191, 210, 344
CviQI	GTAC	2 cut(s)	67, 114
DdeI	CTNAG	4 cut(s)	27, 222, 248, 345
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	5 cut(s)	89, 101, 122, 190, 257
FaiI	YATR	5 cut(s)	87, 99, 120, 188, 255
FatI	CATG	5 cut(s)	85, 97, 118, 186, 253
FbaI	TGATCA	1 cut(s)	327
Fnu4HI	GCNGC	3 cut(s)	235, 362, 381
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	3 cut(s)	235, 362, 381
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	3 cut(s)	235, 362, 381
HaeIII	GGCC	1 cut(s)	210
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	5 cut(s)	89, 101, 122, 190, 257
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HinfI	GANTC	3 cut(s)	5, 50, 182
HphI	GGTGA	4 cut(s)	59, 101, 154, 179
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	3 cut(s)	125, 257, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 377
HpyF3I	CTNAG	4 cut(s)	27, 222, 248, 345
Hsp92II	CATG	5 cut(s)	89, 101, 122, 190, 257
HspAI	GCGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	327
LpnPI	CCDG	5 cut(s)	39, 124, 192, 235, 335
Lsp1109I	GCAGC	3 cut(s)	246, 348, 367
LweI	GCATC	2 cut(s)	112, 187
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	215, 386
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	7 cut(s)	182, 307, 310, 313, 316, 319, 322
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	1 cut(s)	318
MlyI	GAGTC	2 cut(s)	14, 59
MnlI	CCTC	4 cut(s)	85, 88, 211, 214
MseI	TTAA	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	197, 377
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	5 cut(s)	89, 101, 122, 190, 257
NmuCI	GTSAC	2 cut(s)	215, 386
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	3 cut(s)	236, 363, 382
PleI	GAGTC	2 cut(s)	13, 58
PpsI	GAGTC	2 cut(s)	13, 58
PspPI	GGNCC	1 cut(s)	209
RsaI	GTAC	2 cut(s)	68, 115
RsaNI	GTAC	2 cut(s)	67, 114
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	3 cut(s)	235, 362, 381
Sau3AI	GATC	1 cut(s)	327
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	2 cut(s)	14, 59
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	2 cut(s)	144, 346
SfaNI	GCATC	2 cut(s)	112, 187
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	1 cut(s)	318
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	167
TasI	AATT	1 cut(s)	318
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	2 cut(s)	215, 386
TseI	GCWGC	3 cut(s)	234, 361, 380
Tsp45I	GTSAC	2 cut(s)	215, 386
TspDTI	ATGAA	2 cut(s)	74, 330
TspRI	CASTG	1 cut(s)	226
XceI	RCATGY	1 cut(s)	257
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.