Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003634

Physical Location & Seq

Genomic Coordinates Reverse (-)

29425701 .. 29427034

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G298800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGTTTGATTGTCCTTTTGTGTGAAAAACTGCCTCTTTTGTTGAAGGGAAATAATAAAGAGACAGATATAAATGCGTTTCCTGATAATGTTGAGAATTGCACATACAGTGATCATCATGTTATATACACACACATTGCAGGAGATGAACCAGAGAAATGGAGTGGCAGTGAGTCTGGGTGGACAATGTATATTGGCTCCCCAATCCACACTCAAACCAATGATGTTTATCAAATTAGTGATCCCAAAGAAGGGGGTGAGAAAAACAGTGACAAGAAAGCAATTCTTGAATATTTTGATGATGATGAGAGTGATGACTCCATGGCTTCGGATGCCTCCTCTGGCCCAATAAGTAGTCATCATGAATTAGTACTTCCATGTGAAGTTGGTGAAGGAGAGGGTAGGCTCAGGCAAGCAGCTAAGCAAGATCAGCATGGTAATTATTTCAAGTGTTCCTCAGGCAAGAAAGTAGGTTACAGAAAGTTGAAGAAAAGAGATGAGAGATTAGGGATCAAAGAAGAGAAAGAGGAGGAGTTTCTACACAAGGCTGATAGTGCTGGCAGTCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.2

Weight (kDa)

5.09

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08150
fragaria_vesca	FvH4_4g28720 FvH4_5g13090 FvH4_5g13090
prunus_persica	Prupe.1G298800_v2.0.a1 Prupe.1G298800_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1
pyrus_communis	pycom13g04770
rosa_chinensis	RchiOBHm_Chr4g0436841 RchiOBHm_Chr7g0184051
rosa_laevigata	RLG00000005006 RLG00000006492
rosa_multiflora	Rmu_co8463551.1_g000001 Rmu_sc0004712.1_g000012 Rmu_sc0007533.1_g000014
rosa_roxburghii	Rroxscaffold_3G00269950 Rroxscaffold_5G00377910
rosa_rugosa	Rorug04G0296600 Rorug06G0461700 Rorug06G0461700
rosa_samantha	Rh4AG351000 Rh4BG360000 Rh4CG374300 Rh4DG354000 Rh7AG063400 Rh7BG063500 Rh7CG064400 Rh7DG063900
rosa_wichuraiana	Rw0G022810 Rw4G030720 Rw7G005230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	236, 518
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	2 cut(s)	251, 252
AgsI	TTSAA	4 cut(s)	46, 290, 448, 487
AluBI	AGCT	1 cut(s)	419
AluI	AGCT	1 cut(s)	419
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	2 cut(s)	236, 518
AoxI	GGCC	1 cut(s)	343
ApeKI	GCWGC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	269, 401
AxyI	CCTNAGG	1 cut(s)	457
BbvI	GCAGC	1 cut(s)	428
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	56
BisI	GCNGC	1 cut(s)	417
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	418
BmcAI	AGTACT	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	199
BmsI	GCATC	1 cut(s)	322
Bpu10I	CCTNAGC	1 cut(s)	407
Bpu1102I	GCTNAGC	1 cut(s)	420
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 252
Bse21I	CCTNAGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	135
Bse8I	GATNNNNATC	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	337
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	251, 252
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	421, 471
BseRI	GAGGAG	3 cut(s)	328, 542, 545
BseXI	GCAGC	1 cut(s)	428
BshFI	GGCC	1 cut(s)	345
BslI	CCNNNNNNNGG	2 cut(s)	251, 252
BsmAI	GTCTC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	345
Bsp143I	GATC	4 cut(s)	112, 241, 427, 510
Bsp1720I	GCTNAGC	1 cut(s)	420
Bsp19I	CCATGG	1 cut(s)	321
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	2 cut(s)	420, 470
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	2 cut(s)	236, 518
BsrDI	GCAATG	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	4 cut(s)	112, 241, 427, 510
BssT1I	CCWWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	110, 269
Bst6I	CTCTTC	1 cut(s)	513
BstC8I	GCNNGC	2 cut(s)	414, 559
BstDEI	CTNAG	3 cut(s)	407, 420, 457
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	4 cut(s)	115, 244, 430, 513
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	4 cut(s)	112, 241, 427, 510
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 430, 554
BstV1I	GCAGC	1 cut(s)	428
BstXI	CCANNNNNNTGG	1 cut(s)	159
Bsu36I	CCTNAGG	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	345
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	3 cut(s)	115, 175, 274
Cac8I	GCNNGC	2 cut(s)	414, 559
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	6 cut(s)	119, 322, 362, 378, 434, 566
CviJI	RGCY	6 cut(s)	198, 326, 345, 406, 419, 548
CviKI_1	RGCY	6 cut(s)	198, 326, 345, 406, 419, 548
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	3 cut(s)	407, 420, 457
DpnI	GATC	4 cut(s)	114, 243, 429, 512
DpnII	GATC	4 cut(s)	112, 241, 427, 510
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco130I	CCWWGG	1 cut(s)	321
Eco81I	CCTNAGG	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	6 cut(s)	122, 325, 365, 381, 437, 569
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FatI	CATG	6 cut(s)	118, 321, 361, 377, 433, 565
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	1 cut(s)	417
GluI	GCNGC	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	345
Hin1II	CATG	6 cut(s)	122, 325, 365, 381, 437, 569
HinfI	GANTC	2 cut(s)	173, 317
HphI	GGTGA	2 cut(s)	269, 401
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	3 cut(s)	83, 287, 362
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	3 cut(s)	40, 245, 386
HpyCH4III	ACNGT	2 cut(s)	110, 269
HpyCH4V	TGCA	2 cut(s)	102, 140
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 430, 554
HpyF3I	CTNAG	3 cut(s)	407, 420, 457
Hsp92II	CATG	6 cut(s)	122, 325, 365, 381, 437, 569
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	112, 241, 427, 510
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	8 cut(s)	96, 126, 162, 165, 327, 394, 444, 543
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	1 cut(s)	322
MaeIII	GTNAC	2 cut(s)	269, 473
MalI	GATC	4 cut(s)	114, 243, 429, 512
MboI	GATC	4 cut(s)	112, 241, 427, 510
MboII	GAAGA	2 cut(s)	499, 530
MluCI	AATT	5 cut(s)	97, 234, 282, 365, 439
MlyI	GAGTC	2 cut(s)	182, 311
MnlI	CCTC	7 cut(s)	45, 346, 349, 391, 466, 520, 523
MwoI	GCNNNNNNNGC	3 cut(s)	332, 430, 554
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	4 cut(s)	112, 241, 427, 510
NlaIII	CATG	6 cut(s)	122, 325, 365, 381, 437, 569
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	269
PagI	TCATGA	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	418
PleI	GAGTC	2 cut(s)	181, 311
PpsI	GAGTC	2 cut(s)	181, 311
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	344
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	4 cut(s)	112, 241, 427, 510
Sau96I	GGNCC	1 cut(s)	344
ScaI	AGTACT	1 cut(s)	372
SchI	GAGTC	2 cut(s)	182, 311
SetI	ASST	2 cut(s)	421, 475
SfaNI	GCATC	1 cut(s)	322
Sse9I	AATT	5 cut(s)	97, 234, 282, 365, 439
SspI	AATATT	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	110, 269
TasI	AATT	5 cut(s)	97, 234, 282, 365, 439
TatI	WGTACW	1 cut(s)	370
TscAI	CASTG	3 cut(s)	115, 175, 274
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	162, 378
TspRI	CASTG	3 cut(s)	115, 175, 274
ZrmI	AGTACT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.