Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003634

Physical Location & Seq

Genomic Coordinates Reverse (-)

7660242 .. 7660775

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006492

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTTTAGTTTGTTCTCACTTGGAGCTACAAAAATGGAGTCTTCCCAAGTTGTTGGTGCTGAGAAGTGGAGTGGCAACGGTGAGTCTGGGTGGACAATGTACATTGCTTCCTCCATTCATGGTGAAAGACAAGGTGTTTATTCCAGTACCCATGATGCAACCAAAGGAAATAAGGTGAGTGTTGAGCACAAAGACGACGGTGAAGAGAGTGATGATTCCATGGCTTCGGATGCCTCCTCTGGCCCAAGTTACACTGAGAGAAGTCGCGGCACAACTCGTCTCAGGCATGCAGAAGAGGAAGGGAATGTCAAGAAACACAGCACAAAGAAGAAGAAGAAGAAGAAAGAAATTACAATGATCAAAGGAGAGAAAGCTGAGCAGGAAATATTGCTGCACAAGGCAGATAGTGCTGCTAGTCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.42

Weight (kDa)

7.07

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08150
fragaria_vesca	FvH4_4g28720 FvH4_5g13090 FvH4_5g13090
prunus_persica	Prupe.1G298800_v2.0.a1 Prupe.1G298800_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1
pyrus_communis	pycom13g04770
rosa_chinensis	RchiOBHm_Chr4g0436841 RchiOBHm_Chr7g0184051
rosa_laevigata	RLG00000005006 RLG00000006492
rosa_multiflora	Rmu_co8463551.1_g000001 Rmu_sc0004712.1_g000012 Rmu_sc0007533.1_g000014
rosa_roxburghii	Rroxscaffold_3G00269950 Rroxscaffold_5G00377910
rosa_rugosa	Rorug04G0296600 Rorug06G0461700 Rorug06G0461700
rosa_samantha	Rh4AG351000 Rh4BG360000 Rh4CG374300 Rh4DG354000 Rh7AG063400 Rh7BG063500 Rh7CG064400 Rh7DG063900
rosa_wichuraiana	Rw0G022810 Rw4G030720 Rw7G005230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	267
AciI	CCGC	1 cut(s)	267
AfaI	GTAC	2 cut(s)	101, 148
AluBI	AGCT	2 cut(s)	26, 374
AluI	AGCT	2 cut(s)	26, 374
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	284
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	391, 410
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	4 cut(s)	92, 134, 187, 212
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	378, 397
BclI	TGATCA	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	414
BisI	GCNGC	3 cut(s)	268, 392, 411
BlpI	GCTNAGC	1 cut(s)	375
BlsI	GCNGC	3 cut(s)	269, 393, 412
BmgT120I	GGNCC	1 cut(s)	242
BmsI	GCATC	2 cut(s)	145, 220
BpiI	GAAGAC	1 cut(s)	33
Bpu1102I	GCTNAGC	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	4 cut(s)	51, 246, 295, 366
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	378, 397
BsgI	GTGCAG	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	284
BsmBI	CGTCTC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	1 cut(s)	357
Bsp1720I	GCTNAGC	1 cut(s)	375
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	4 cut(s)	52, 247, 294, 367
BspFNI	CGCG	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	102
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	80, 200
Bst6I	CTCTTC	2 cut(s)	198, 288
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstAUI	TGTACA	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	4 cut(s)	60, 255, 281, 375
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	1 cut(s)	267
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 407
BstNSI	RCATGY	1 cut(s)	290
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	378, 397
BstV2I	GAAGAC	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	100, 147
CviAII	CATG	4 cut(s)	119, 152, 220, 287
CviJI	RGCY	4 cut(s)	26, 224, 243, 374
CviKI_1	RGCY	4 cut(s)	26, 224, 243, 374
CviQI	GTAC	2 cut(s)	100, 147
DdeI	CTNAG	4 cut(s)	60, 255, 281, 375
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	198, 288
EarI	CTCTTC	2 cut(s)	198, 288
Eco130I	CCWWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	4 cut(s)	122, 155, 223, 290
FaiI	YATR	4 cut(s)	120, 153, 221, 288
FatI	CATG	4 cut(s)	118, 151, 219, 286
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	268, 392, 411
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	3 cut(s)	268, 392, 411
FspBI	CTAG	1 cut(s)	414
GluI	GCNGC	3 cut(s)	268, 392, 411
HaeIII	GGCC	1 cut(s)	243
Hin1II	CATG	4 cut(s)	122, 155, 223, 290
HinfI	GANTC	3 cut(s)	38, 83, 215
HphI	GGTGA	4 cut(s)	92, 134, 187, 212
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	310
Hpy8I	GTNNAC	1 cut(s)	93
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	2 cut(s)	80, 200
HpyCH4V	TGCA	3 cut(s)	158, 290, 394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 407
HpyF3I	CTNAG	4 cut(s)	60, 255, 281, 375
Hsp92II	CATG	4 cut(s)	122, 155, 223, 290
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	5 cut(s)	72, 157, 225, 268, 365
Lsp1109I	GCAGC	2 cut(s)	378, 397
LweI	GCATC	2 cut(s)	145, 220
MaeI	CTAG	1 cut(s)	414
MaeIII	GTNAC	2 cut(s)	248, 416
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	8 cut(s)	33, 215, 305, 340, 343, 346, 349, 352
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	1 cut(s)	348
MlyI	GAGTC	2 cut(s)	47, 92
MnlI	CCTC	4 cut(s)	121, 244, 247, 289
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	230, 407
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	4 cut(s)	122, 155, 223, 290
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	290
PaeI	GCATGC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	269, 393, 412
PleI	GAGTC	2 cut(s)	46, 91
PpsI	GAGTC	2 cut(s)	46, 91
PspPI	GGNCC	1 cut(s)	242
RsaI	GTAC	2 cut(s)	101, 148
RsaNI	GTAC	2 cut(s)	100, 147
SatI	GCNGC	3 cut(s)	268, 392, 411
Sau3AI	GATC	1 cut(s)	357
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	2 cut(s)	47, 92
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	4 cut(s)	28, 136, 177, 376
SfaNI	GCATC	2 cut(s)	145, 220
SphI	GCATGC	1 cut(s)	290
Sse9I	AATT	1 cut(s)	348
SsiI	CCGC	1 cut(s)	267
SspI	AATATT	1 cut(s)	387
SspMI	CTAG	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	80, 200
TasI	AATT	1 cut(s)	348
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	215
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	2 cut(s)	391, 410
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	259
XceI	RCATGY	1 cut(s)	290
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.