Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003634

Physical Location & Seq

Genomic Coordinates Forward (+)

60045098 .. 60045761

Gene Structure 664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40515

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTTAGAGCTTTTGCTTGGAAACATTTGGATATATAGTTTGTTCTCACTTGGAGCTACAAAAATGGAGTCTTCCCAAGTTGTTAATGCTGAGAAGTGGAGTGGCAATGGTGAGTCTGGGTGGACAATGTACATTGCCTCCTCCATTCATGGTGAAAGACATGGTGTTTATTCCAGTACCCATGATGCAACCAAAGAAAATAAGGTGAGTGTTGAGCACAAAGACGACGGTGAAGAGAGTGATGATTCCATGGCTTCGGATGCCTCCTCTGGCCCAAGTCACACTGAGAGAAGTCGCAGCGCAACTCGTCTCAGGCATGCAGAAAAGGAAGGGAATGTCAAGAAACACAGCACAAAGAAGAAGAAGAAGAAGAATGAAATTACAATGATCAAAGGAGAGAAAGCTGAGCAGGAAATATTGCTGCACAAGGCAGATAGTGCTGCTAGTCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.7

Weight (kDa)

6.76

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08150
fragaria_vesca	FvH4_4g28720 FvH4_5g13090 FvH4_5g13090
prunus_persica	Prupe.1G298800_v2.0.a1 Prupe.1G298800_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1 Prupe.5G211600_v2.0.a1
pyrus_communis	pycom13g04770
rosa_chinensis	RchiOBHm_Chr4g0436841 RchiOBHm_Chr7g0184051
rosa_laevigata	RLG00000005006 RLG00000006492
rosa_multiflora	Rmu_co8463551.1_g000001 Rmu_sc0004712.1_g000012 Rmu_sc0007533.1_g000014
rosa_roxburghii	Rroxscaffold_3G00269950 Rroxscaffold_5G00377910
rosa_rugosa	Rorug04G0296600 Rorug06G0461700 Rorug06G0461700
rosa_samantha	Rh4AG351000 Rh4BG360000 Rh4CG374300 Rh4DG354000 Rh7AG063400 Rh7BG063500 Rh7CG064400 Rh7DG063900
rosa_wichuraiana	Rw0G022810 Rw4G030720 Rw7G005230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	131, 178
AluBI	AGCT	3 cut(s)	10, 56, 404
AluI	AGCT	3 cut(s)	10, 56, 404
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	314
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	3 cut(s)	297, 421, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	4 cut(s)	122, 164, 217, 242
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	3 cut(s)	309, 408, 427
BclI	TGATCA	1 cut(s)	387
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	1 cut(s)	444
BisI	GCNGC	3 cut(s)	298, 422, 441
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	3 cut(s)	299, 423, 442
BmgT120I	GGNCC	1 cut(s)	272
BmsI	GCATC	2 cut(s)	175, 250
BpiI	GAAGAC	1 cut(s)	63
Bpu1102I	GCTNAGC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bse1I	ACTGG	1 cut(s)	174
Bse3DI	GCAATG	2 cut(s)	112, 132
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	265
BseMI	GCAATG	2 cut(s)	112, 132
BseMII	CTCAG	4 cut(s)	81, 276, 325, 396
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	2 cut(s)	130, 256
BseXI	GCAGC	3 cut(s)	309, 408, 427
BsgI	GTGCAG	1 cut(s)	407
BshFI	GGCC	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	314
BsmBI	CGTCTC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	387
Bsp1720I	GCTNAGC	1 cut(s)	405
Bsp19I	CCATGG	1 cut(s)	249
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	4 cut(s)	82, 277, 324, 397
BsrDI	GCAATG	2 cut(s)	112, 132
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	4 cut(s)	90, 285, 311, 405
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	1 cut(s)	387
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 437
BstNSI	RCATGY	1 cut(s)	320
BstV1I	GCAGC	3 cut(s)	309, 408, 427
BstV2I	GAAGAC	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	318
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	130, 177
CviAII	CATG	5 cut(s)	149, 161, 182, 250, 317
CviJI	RGCY	5 cut(s)	10, 56, 254, 273, 404
CviKI_1	RGCY	5 cut(s)	10, 56, 254, 273, 404
CviQI	GTAC	2 cut(s)	130, 177
DdeI	CTNAG	4 cut(s)	90, 285, 311, 405
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	5 cut(s)	152, 164, 185, 253, 320
FaiI	YATR	7 cut(s)	34, 36, 150, 162, 183, 251, 318
FatI	CATG	5 cut(s)	148, 160, 181, 249, 316
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	298, 422, 441
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	3 cut(s)	298, 422, 441
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	3 cut(s)	298, 422, 441
HaeIII	GGCC	1 cut(s)	273
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	5 cut(s)	152, 164, 185, 253, 320
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	3 cut(s)	68, 113, 245
HphI	GGTGA	4 cut(s)	122, 164, 217, 242
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	1 cut(s)	123
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	3 cut(s)	188, 320, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 437
HpyF3I	CTNAG	4 cut(s)	90, 285, 311, 405
Hsp92II	CATG	5 cut(s)	152, 164, 185, 253, 320
HspAI	GCGC	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	5 cut(s)	102, 187, 255, 298, 395
Lsp1109I	GCAGC	3 cut(s)	309, 408, 427
LweI	GCATC	2 cut(s)	175, 250
MaeI	CTAG	1 cut(s)	444
MaeIII	GTNAC	2 cut(s)	278, 446
MalI	GATC	1 cut(s)	389
MboI	GATC	1 cut(s)	387
MboII	GAAGA	7 cut(s)	63, 245, 370, 373, 376, 379, 382
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	1 cut(s)	378
MlyI	GAGTC	2 cut(s)	77, 122
MnlI	CCTC	4 cut(s)	148, 151, 274, 277
MseI	TTAA	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	260, 437
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	1 cut(s)	387
NlaIII	CATG	5 cut(s)	152, 164, 185, 253, 320
NmuCI	GTSAC	2 cut(s)	278, 446
NspI	RCATGY	1 cut(s)	320
PaeI	GCATGC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	299, 423, 442
PleI	GAGTC	2 cut(s)	76, 121
PpsI	GAGTC	2 cut(s)	76, 121
PspPI	GGNCC	1 cut(s)	272
RsaI	GTAC	2 cut(s)	131, 178
RsaNI	GTAC	2 cut(s)	130, 177
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	3 cut(s)	298, 422, 441
Sau3AI	GATC	1 cut(s)	387
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	2 cut(s)	77, 122
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	4 cut(s)	12, 58, 207, 406
SfaNI	GCATC	2 cut(s)	175, 250
SphI	GCATGC	1 cut(s)	320
Sse9I	AATT	1 cut(s)	378
SspI	AATATT	1 cut(s)	417
SspMI	CTAG	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	230
TasI	AATT	1 cut(s)	378
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	2 cut(s)	278, 446
TseI	GCWGC	3 cut(s)	297, 421, 440
Tsp45I	GTSAC	2 cut(s)	278, 446
TspDTI	ATGAA	2 cut(s)	137, 390
TspRI	CASTG	1 cut(s)	289
XceI	RCATGY	1 cut(s)	320
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.