Rroxscaffold_5G00377910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003634
Physical Location & Seq
Forward (+)
58451546 .. 58451938
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00377910.1

Sequence Viewer

Length: 393 bp
ATGGAGTCTTCCCAAGTTGTTAGTGCTGAGAAGTGGAGTGGCAATGGTGAGTCTGGGTGGACAATGTACATTGCCTCCTCCTTTCATGGTGAAAGACATGGTGTTTATTCCAGTACCCATGATGCAACCAAAGAAAATAAGGTGAGTGTTGAGCACAAAGACGTCGACGGTGAAGAGAGTGATGATTCCATGGCTTCGGATGCCTCCTCTGGCCCAAGTCACACTGAGAGAAGTCGCGGCGCAACTCGTCTCAGGCATGCAGAAAAGGAATGGAATGTCAAGAAACACAGCACAAAGAAGAAGAAGAAGAATGAAATTACAATGATCAAAGGAGAGAAAACTGAGCAGGAAATATTGCTGCACAAGGCAGATAGTGCTGCTAGTCACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.44

Weight (kDa)

6.5

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
AccI GTMKAC 1 cut(s) 165
AccII CGCG 1 cut(s) 237
AciI CCGC 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 2 cut(s) 68, 115
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 254
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 2 cut(s) 358, 377
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 4 cut(s) 59, 101, 154, 182
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 345, 364
BclI TGATCA 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 381
BisI GCNGC 3 cut(s) 238, 359, 378
BlsI GCNGC 3 cut(s) 239, 360, 379
BmgT120I GGNCC 1 cut(s) 212
BmsI GCATC 2 cut(s) 112, 190
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 189
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bse1I ACTGG 1 cut(s) 111
Bse3DI GCAATG 2 cut(s) 49, 69
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 205
BseMI GCAATG 2 cut(s) 49, 69
BseMII CTCAG 4 cut(s) 18, 216, 265, 333
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 2 cut(s) 67, 196
BseXI GCAGC 2 cut(s) 345, 364
BsgI GTGCAG 1 cut(s) 344
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 254
BsmBI CGTCTC 1 cut(s) 254
BsnI GGCC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 156
Bsp1407I TGTACA 1 cut(s) 66
Bsp143I GATC 1 cut(s) 324
Bsp19I CCATGG 1 cut(s) 189
BspACI CCGC 1 cut(s) 237
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 4 cut(s) 19, 217, 264, 334
BspFNI CGCG 1 cut(s) 237
BsrDI GCAATG 2 cut(s) 49, 69
BsrGI TGTACA 1 cut(s) 66
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 324
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 374
BstAUI TGTACA 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 4 cut(s) 27, 225, 251, 342
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 237
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 2 cut(s) 200, 374
BstNSI RCATGY 1 cut(s) 260
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 345, 364
BsuRI GGCC 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 258
CfoI GCGC 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 67, 114
CviAII CATG 5 cut(s) 86, 98, 119, 190, 257
CviJI RGCY 2 cut(s) 194, 213
CviKI_1 RGCY 2 cut(s) 194, 213
CviQI GTAC 2 cut(s) 67, 114
DdeI CTNAG 4 cut(s) 27, 225, 251, 342
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 5 cut(s) 89, 101, 122, 193, 260
FaiI YATR 5 cut(s) 87, 99, 120, 191, 258
FatI CATG 5 cut(s) 85, 97, 118, 189, 256
FbaI TGATCA 1 cut(s) 324
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 3 cut(s) 238, 359, 378
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 3 cut(s) 238, 359, 378
FspBI CTAG 1 cut(s) 381
GlaI GCGC 1 cut(s) 241
GluI GCNGC 3 cut(s) 238, 359, 378
HaeIII GGCC 1 cut(s) 213
HhaI GCGC 1 cut(s) 242
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 5 cut(s) 89, 101, 122, 193, 260
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 3 cut(s) 5, 50, 185
HphI GGTGA 4 cut(s) 59, 101, 154, 182
Hpy166II GTNNAC 2 cut(s) 60, 166
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 1 cut(s) 280
Hpy8I GTNNAC 2 cut(s) 60, 166
Hpy99I CGWCG 2 cut(s) 167, 170
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 125, 260, 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 374
HpyF3I CTNAG 4 cut(s) 27, 225, 251, 342
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 5 cut(s) 89, 101, 122, 193, 260
HspAI GCGC 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 1 cut(s) 324
LpnPI CCDG 5 cut(s) 39, 124, 195, 238, 332
Lsp1109I GCAGC 2 cut(s) 345, 364
LweI GCATC 2 cut(s) 112, 190
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 218, 383
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 5 cut(s) 185, 310, 313, 316, 319
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 1 cut(s) 315
MlyI GAGTC 2 cut(s) 14, 59
MnlI CCTC 4 cut(s) 85, 88, 214, 217
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 200, 374
NcoI CCATGG 1 cut(s) 189
NdeII GATC 1 cut(s) 324
NlaIII CATG 5 cut(s) 89, 101, 122, 193, 260
NmuCI GTSAC 2 cut(s) 218, 383
NspI RCATGY 1 cut(s) 260
PaeI GCATGC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 3 cut(s) 239, 360, 379
PleI GAGTC 2 cut(s) 13, 58
PpsI GAGTC 2 cut(s) 13, 58
PspPI GGNCC 1 cut(s) 212
RsaI GTAC 2 cut(s) 68, 115
RsaNI GTAC 2 cut(s) 67, 114
SalI GTCGAC 1 cut(s) 164
SatI GCNGC 3 cut(s) 238, 359, 378
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 2 cut(s) 14, 59
SduI GDGCHC 1 cut(s) 156
SetI ASST 2 cut(s) 144, 165
SfaNI GCATC 2 cut(s) 112, 190
SgrDI CGTCGACG 1 cut(s) 164
SphI GCATGC 1 cut(s) 260
Sse9I AATT 1 cut(s) 315
SsiI CCGC 1 cut(s) 237
SspI AATATT 1 cut(s) 354
SspMI CTAG 1 cut(s) 381
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 165
TasI AATT 1 cut(s) 315
TatI WGTACW 1 cut(s) 66
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 1 cut(s) 185
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 2 cut(s) 218, 383
TseI GCWGC 2 cut(s) 358, 377
Tsp45I GTSAC 2 cut(s) 218, 383
TspDTI ATGAA 2 cut(s) 74, 327
TspRI CASTG 1 cut(s) 229
XceI RCATGY 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 381
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.